Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq22 210 2e-48 seq2 138 9e-27 seq19 114 1e-19 seq88 87.8 1e-11 >seq22 Length=22071668 Score = 210 bits (232), Expect = 2e-48 Identities = 379/546 (69%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| ||| ||||| ||||| | || |||| || || || Sbjct 21657179 GGTATTGATCTTGGCACCACCTATTCCTGTGTGGGTGTCTTCCAGCATGGGAAGGTGGAG 21657238 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 | | ||||||||| || |||| | |||| || ||| ||||||| ||||||| || || Sbjct 21657239 CTAACTGCCAATGACCAGGGTACCCGAACCACACCAAGTTATGTTGCTTTCACTGACACA 21657298 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATAC-- 550173 |||| ||| |||| ||||| ||||| |||| | || || || || ||||| || Sbjct 21657299 GAACGATTAATTGGAGATGCTGCAAAGAATCAGGTTGCAATG--AACCCCACCAACACAG 21657356 Query 550174 -TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | ||||| |||| ||| | | | |||| || ||| | ||| | ||||||| | | Sbjct 21657357 TTTTTTTTAATGCCAAATGGCTGCTCAGAAGTAGGTTTGACGATGCCGTTGTTCAGTCTG 21657416 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTA 550292 |||||||||| ||||| ||| | || |||| | | || | || | | ||| Sbjct 21657417 ATATGAAGCACTGGCCCTTCGTGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTAG 21657476 Query 550293 CTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || ||||| | ||||| ||| | ||||| | | || ||||||||| | | Sbjct 21657477 AGTATAAAGGA-GAGGCAAACAGTTTCTACCCAGAGGAGGTGTCCTCTATGGTTCTGACC 21657535 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAAC 550410 |||||||| ||| || || | | | | |||| ||||| |||| ||| | || Sbjct 21657536 AAAATGAAGGAAATTGCAGAAGCCTATCTCAG-AAAGATTGTTACCAATGCTGTAGTCAC 21657594 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || || || ||||| || || | | || || |||||||||||| |||||| Sbjct 21657595 TGTGCCGGCCTACTTCAATGATTCTCAGCAATAGGCAACAAAAGATGCTGGAACTATTGC 21657654 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || ||||| ||||| |||||||||||||| ||||||||||| |||| ||||| || Sbjct 21657655 TGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTATGGGCT 21657714 Query 550531 TGATAA 550536 ||||| Sbjct 21657715 AGATAA 21657720 Score = 145 bits (160), Expect = 6e-29 Identities = 331/491 (67%), Gaps = 9/491 (2%) Strand=Plus/Plus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAA 552171 ||||| ||||| || || ||||| ||||| ||||| || || |||| ||| | | | Sbjct 21668437 CATGACATTGTCCTGGTGGGTGGTTCTACCAGAATCCCCAAGATTCA-GAAGCTTCTGCA 21668495 Query 552172 GTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCT 552231 | ||| || ||| | ||| || | || | || |||| || ||||| ||| |||| | Sbjct 21668496 GGACTTCTT-CAACAGGAAATAACTGAACAAGAGCATTAAGCCTGATGAAGCTATTGCTT 21668554 Query 552232 ATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATA 552291 ||||||| || |||| | ||| ||||| ||||| | | ||| || | || || Sbjct 21668555 ATGGTGCAGCTGTTCAGGTAGCCATTCTATCTGGTGACAAGTCTGAGAATGTTCAGGATT 21668614 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 | | || | ||||| |||||||| || |||||| | ||||| | ||| || | |||| Sbjct 21668615 TGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGAGTCATGA 21668674 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | || ||| | || ||||| | |||||| ||| | | | || |||| | Sbjct 21668675 CAGGCCTCATCAAGAGCAATACCATCATTCCTACTAAGCAGACACAGACTTTCACTACAT 21668734 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 |||| || ||||| | | ||| ||||| | | |||||| ||||| | || | Sbjct 21668735 ATTCTGACAATCAGCCCGGTGTGCTCATTCAGGTCTATGAAGGTGAAAGCGCCATGACCA 21668794 Query 552472 AAGATAATAATCAACTTGGTACTTTT-AATTTAGAAGGTATTCCTCCTGCT---CCTCGT 552527 | ||||| || | ||||| | ||| || ||| | || || ||||| || || ||| Sbjct 21668795 AGGATAACAACCTGCTTGGAAAGTTTGAACTTATA-GGCATCCCTCCAGCAGCACCCCGT 21668853 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||| || || ||||||||||| || | ||||| || Sbjct 21668854 GGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATGCCAATGGCATCCTCAATGTCTCT 21668913 Query 552588 GCTTGTGATAA 552598 ||| ||||| Sbjct 21668914 GCTGTAGATAA 21668924 >seq2 Length=60928133 Score = 138 bits (152), Expect = 9e-27 Identities = 327/488 (67%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAA 552171 ||||| |||| || || |||| ||||||||||| || || |||| ||| | | | Sbjct 56428999 CATGACATTGCCCTGGTGAGTGGGTCTACAAGAATCCCCAAGATTCA-GAAGCTTCTGCA 56429057 Query 552172 GTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCT 552231 | ||| || |||||| ||| || | || | || |||| || ||||| |||||||| | Sbjct 56429058 GGACTTCTT-CAATGGGAAAGAACTGAACAAGAGCATTAACCCTGATGAAGCTGTTGCTT 56429116 Query 552232 ATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATA 552291 ||||||| || |||| ||||| ||||| |||||| | | ||| || | || || Sbjct 56429117 ATGGTGCAGCTGTTCAGGCAGCCATTCTATCTGGAGACAAGTCTGATAATGTTCAGGATT 56429176 Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 || | || | ||| | |||| ||| || |||||| | ||||| | ||| | | | |||| Sbjct 56429177 TTCTGCTGTTGGATATCACTCTTCTTTCCCTTGGTATTGAAACTGCTGGTGCTGTCATGA 56429236 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 | | |||||| | |||| | || ||| ||| | | | ||| ||| | Sbjct 56429237 CCATCCTTATCAAGCACGATACCATCATCCCTACTAAGCAGACACAGACATTCACTATCT 56429296 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | || ||||| ||| ||| |||| ||| |||||| |||| | || | Sbjct 56429297 ACTTTGACAATCAGCCTGGTGTGGTCATTCTTGTTTATGAAGGTCAAAGGGCCATAACCA 56429356 Query 552472 AAGATAATAATCAACTTGGTACTTTT-AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 | ||||| || | |||||| | ||| || ||| | || | ||||| | || |||| Sbjct 56429357 AGGATAACAACCTACTTGGAAAGTTTGAACTTACA-GGCACCCCTCCAGAACCCTGTGGT 56429415 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || |||||||| | ||| || || ||||||||||| || | ||||| ||||| Sbjct 56429416 GTTCCTCAGATTGAAGTCATTTTTGACATTGATGCCAATGGCATCCTCAATGTCTCTGCT 56429475 Query 552591 TGTGATAA 552598 ||||| Sbjct 56429476 GTAGATAA 56429483 Score = 100 bits (110), Expect = 2e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || | |||||| || ||||| | || | || || || Sbjct 56428422 GTTACCAATGCTGTGGTCACAGTGCTAGCATACTTCAATGATCCTCAGCAACAGGCAACA 56428481 Query 550451 AAAGATGCTGGACGTATTGCTGGACTT-AATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||| |||||||| |||||||| |||| ||||| ||||| || ||||||||||| ||||| Sbjct 56428482 AAATATGCTGGAACTATTGCTG-ACTTCAATGTGCTTCGAATCATCAATGAACCAACTGC 56428540 Query 550510 TGCTGCACTTGCATATGGACTTGATAA 550536 |||||| |||| |||| || ||||| Sbjct 56428541 TGCTGCTGTTGCTAATGGGCTAGATAA 56428567 >seq19 Length=22253760 Score = 114 bits (126), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || || || || || ||||| || || || || || || Sbjct 3248296 GTTACCAATGCTGTGGTCACCGTGCCGGCCTACTTCAATGATTCTCAGCGACAGGCAACA 3248355 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| ||||||||| || ||||| ||||| |||||||||||||| |||||| Sbjct 3248356 AAAGATGCTGGGACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCT 3248415 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 3248416 GCTGCTATTGCTTATGGGCTAGACAA 3248441 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||| ||||| | || |||| || || || Sbjct 3247570 GGTATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGGAAGGTGGAG 3247629 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||||||||| || |||||| |||| || ||| ||||| |||||||||| || Sbjct 3247630 ATTATTGCCAATGACCAGGGTAACCGAACCACGCCAAGCTATGTAGCTTTCACGGACACA 3247689 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| ||| |||| ||||| || || |||| | | | || || ||||| || || Sbjct 3247690 GAACGATTAATTGGAGATGCTGCGAAGAATCAGGTCGCAATGAACCCCACCAACACAGTT 3247749 Query 550178 TTTG 550181 |||| Sbjct 3247750 TTTG 3247753 >seq88 Length=9234670 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 ||||| |||||||| ||| ||||| || ||||| |||| | || | ||||| Sbjct 4564074 ACAAGGTGAAGGGTGGACTCCTTTTGG--ATGTTGTAGTCAGACAACGTGCGGCCATCTT 4564131 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || | || || ||||| || || || ||||| ||||||||||||||||| ||||| | Sbjct 4564132 CCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 4564191 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || || | | | | ||||| || | |||| Sbjct 4564192 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 4564251 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || || |||||||| ||||| Sbjct 4564252 TCCCCGTAAGGGTCTTCACGAAAATCTGCAT 4564282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028159829187160