Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq259 96.9 4e-15 seq81 93.3 5e-14 >seq259 Length=986218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 14195 ACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGT 14254 |||||||||||| ||||||||||||||| || || | |||| |||| || || || || Sbjct 590297 ACATGTGTATCTCTCCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGT 590356 Query 14255 CCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTC 14314 |||||||| || || | || || ||| ||| | || ||| | || ||||| || || Sbjct 590357 TCCATCTCCTGCAGGCCTGGTGTCCATCACCTCCATGTCCTGAGTCTGGTCTTCCCCATC 590416 Query 14315 TCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 | | ||| || | | || ||||| || || || || || |||||||||| Sbjct 590417 CCTCTGCCAGGTCAGGGTGATGTCAGCTGGGTAGAATCCAAAGGCCCAGCACC 590469 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 |||| |||| |||||| || | |||||||||||| ||| ||||||||||| || || Sbjct 873300 GGTAGTCCTTTATGTTGCACATGACATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACC 873359 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || | || | || || | |||| || Sbjct 873360 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACAAGCTCCATA 873419 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || ||| | || || || || || | | ||| || | | |||||||| | || || Sbjct 873420 TCCTGAGTCTGGTCCTCCCCATCCCTTTGCCAGGTCAGGATGATATCAGCAGAGTAGAAG 873479 Query 14352 CCCAAAGCCCAGCACC 14367 | ||| |||||||||| Sbjct 873480 CTCAAGGCCCAGCACC 873495 >seq81 Length=10403393 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| ||| | | || | ||| || | || |||| | ||||| | | ||||||||| Sbjct 9898924 ACTGAGTAACTTAGAAGTTACCAACCATACTCGCCTGTTTGAGAATGGAACCTGCGAGAT 9898865 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| ||| ||| |||| || | | |||| | ||| |||||| Sbjct 9898864 CCACCTGACCTGTATTGTGGAGAATCCAAACCATACTGTCTCAGTTGGGTGGCAGGCCT- 9898806 Query 2327 GGGCAAGACGCTTC----TACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACA 2382 || || || || || | || || || ||||| ||||||||| || | ||| Sbjct 9898805 ---CAGGAGGCATCTCTTTAGGGGAACCAAATCTCACTGTCTCCTGGGATCCAAAGAATT 9898749 Query 2383 GCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGG 2442 |||||| |||| ||||| ||| || || || ||||| || ||||| || || | | Sbjct 9898748 CCAGTGACCAGAGTTACACCTGCCAAGCTGAGAATGCTGTCAGTAATCTGTCCGTCTCTG 9898689 Query 2443 TCTCGGCCCAGA 2454 |||| ||||||| Sbjct 9898688 TCTCTGCCCAGA 9898677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629114205996640