Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq228 120 2e-22 seq68 109 4e-19 seq4 82.4 6e-11 >seq228 Length=1691671 Score = 120 bits (132), Expect = 2e-22 Identities = 184/259 (71%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || | || || ||||| ||||||| |||| || || ||||| | Sbjct 1401687 ATGAGCTCCTTGTGGCAGCTCCTTGAGCTCTGTGCTGAGAACTATATTAATTCTGTCCTT 1401746 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || | ||||||||||| ||||| | ||||| ||||||| ||| Sbjct 1401747 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAGGTCTTCCATCCCATAATCACCAGGTT 1401806 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| || | |||| || || || |||| | | |||| || || || || || Sbjct 1401807 CTGTTTAC------CTGAGGAGGTGGCAGTCATTCTTTGGAAGTACTTGAATTCGTTCCA 1401860 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCAT-GTCTGGACACA 112318 | ||| || |||| ||||| |||||||| || || |||||||| |||| | ||| Sbjct 1401861 GA-----GCA-GAGGCCAGGGCAGGTCTCCGTTCTTGCCAATGCCCATATTCTGCA-ACA 1401913 Query 112319 CGGCCACGATACCGTTCAG 112337 |||| ||||| | |||||| Sbjct 1401914 CGGCGACGATGCAGTTCAG 1401932 >seq68 Length=11249547 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || || ||||||||||| || || || || ||||| || | | Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 || || || ||||| | || ||||| ||||| || ||||| ||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 11209963 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||| ||||||||||| || || || || |||||||| Sbjct 11211883 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 11211942 Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || || | | |||| ||| ||| |||||||||| |||| ||| || ||||| | Sbjct 11211943 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 11212001 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 11212002 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAACC 11212050 >seq4 Length=37932696 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 21118494 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 21118553 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 21118554 ATGGAGAACCAGGTTTTCCGTCCCATAATCACCAGGTTCTGTTTACCT 21118601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408510609099932