Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq270 82.4 2e-11 >seq270 Length=930488 Score = 82.4 bits (90), Expect = 2e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||||| | || || || || | ||| | | Sbjct 655839 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCAGTAAAGCACTTCA 655780 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | |||||||| || ||||| || || ||| | ||| || || ||||||||||| | | Sbjct 655779 TAGATGTGGGAGCCGGTGTCATAGACGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 655720 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||| ||| | | || ||| | | || ||||||| | ||||| ||| | |||| Sbjct 655719 TTAACTTTGGAAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATTGCACAGCTCATTT 655660 Query 1138 GTGAA 1142 ||||| Sbjct 655659 GTGAA 655655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138646219203504