Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq50 168 9e-37 >seq50 Length=13914209 Score = 168 bits (186), Expect = 9e-37 Identities = 225/310 (73%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 153702 AGTTGAAGTGGTAACACAGGATGTAAATTCATCA-CTTCGATCGCCCGCGTCCCTCAGAT 153760 ||| |||||||| || ||||||| ||| | | || | | || || ||| | ||| Sbjct 3551180 AGTGGAAGTGGTGACCCAGGATG-AAAGAAAGCTGCTGCACACACCTGCATCCTTACGAT 3551122 Query 153761 GCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAG 153820 | || ||||| | || || || || ||||| || ||||| || |||||||||||| Sbjct 3551121 GTTCTCTGAAACAATCCCAGGAGCCATTGATTGTGACATGGCAGAAAAAGAAAGCTGTAA 3551062 Query 153821 GTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATA 153880 | |||||||| |||| ||| ||||||||| ||| || || || ||||||| |||||| Sbjct 3551061 GCCCAGAAAACATGGTCACTTATAGCAAAAACCATGGGGTTGTAGTTCAGCCTGCATATA 3551002 Query 153881 AAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATG 153940 ||| || | || || || || | || || | |||| || || || || ||||| Sbjct 3551001 GAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACTTTCTGGAACA 3550942 Query 153941 CAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGG 154000 |||||||||||||||||||||| || |||||||| || || | ||| | |||||| ||| Sbjct 3550941 CAACACTGGATGATGAAGGCTGCTACATGTGTCTCTTCAACACGTTTGTTTCTGGGAAGA 3550882 Query 154001 TATCGGGAAC 154010 | || ||||| Sbjct 3550881 TCTCAGGAAC 3550872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649124830699840