Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq22 201 7e-46 seq223 145 5e-29 seq19 111 1e-18 seq2 96.9 2e-14 seq88 91.5 1e-12 >seq22 Length=22071668 Score = 201 bits (222), Expect = 7e-46 Identities = 407/597 (68%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || || ||||| | ||| | || |||| || Sbjct 21657172 TGCAGTTGGTATTGATCTTGGCACCACCTATTCCTGTGTGGGTGTCTTCCAGCATGGGAA 21657231 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||| |||||||||||| |||| |||| |||||| |||||| |||| || Sbjct 21657232 GGTGGAGCTAACTGCCAATGACCAGGGTACCCGAACCACACCAAGTTATGTTGCTTTCAC 21657291 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || |||| | |||||||||||||| || |||| | |||| || || || Sbjct 21657292 TGACACAGAACGATTAATTGGAGATGCTGCAAAGAATCAGGTTGCAATGAACCCCACCAA 21657351 Query 474508 TAC---TATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || | ||||| |||| ||| | || | | ||| ||||| ||| || ||| || Sbjct 21657352 CACAGTTTTTTTTAATGCCAAATGGCTGCTCAGAAGTAGGTTTGACGATGCCGTTGTTCA 21657411 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA 474624 ||||||||| || ||||| || |||| | |||| || || | || | | | Sbjct 21657412 GTCTGATATGAAGCACTGGCCCTTCGTGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCA 21657471 Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCG-GAACAAATTTCTTCAATGGTTT 474683 || | | ||| || | ||||| ||| ||| || | | || || |||||| Sbjct 21657472 AGTAGAGTATAAAGGAGAGGC-AAACAGTTTCTACCCAGAGGAGGTGTCCTCTATGGTTC 21657530 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTA 474742 | |||||||||| ||| || | ||||| || |||| || || |||| ||| Sbjct 21657531 TGACCAAAATGAAGGAAATTGCAGAAGCCTATCTCAGA-AAGATTGTTACCAATGCTGTA 21657589 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | ||||| || || || || ||||||||||| | | ||||| |||||||| |||| Sbjct 21657590 GTCACTGTGCCGGCCTACTTCAATGATTCTCAGCAATAGGCAACAAAAGATGCTGGAACT 21657649 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| || || ||||| | || ||||| ||||||||||| || || || |||||||| Sbjct 21657650 ATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTATTGCTTAT 21657709 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 || || |||||||| | || ||| |||||| | | ||||| | ||||||| Sbjct 21657710 GGGCTAGATAAGAAGTTTGGAGCTGAAAGGAATGTTCTCAGTTTTGACT-TGGAGGT 21657765 Score = 154 bits (170), Expect = 1e-31 Identities = 350/516 (68%), Gaps = 13/516 (3%) Strand=Plus/Plus Query 475674 CTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTC 475733 ||||||| ||||| ||||| ||||||| ||||| || || || ||||| || ||||| | Sbjct 21668414 CTAAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCTACCAGAATCC 21668473 Query 475734 CAAAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTG 475790 | || || |||| |||| || | | || || | ||| | | || | || Sbjct 21668474 CCAAGATTC-AGAA--GCTTCTGCAGGACTTCTTCAACAGGAAATAACTGAACAAGAGCA 21668530 Query 475791 TAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTC 475850 | || |||||||||||| |||| ||||| || ||||| || | ||| ||| |||| ||| Sbjct 21668531 TTAAGCCTGATGAAGCTATTGCTTATGGTGCAGCTGTTCAGGTAGCCATTCTATCTGGTG 21668590 Query 475851 AATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 | || | ||||| | | || | | || | || || ||||| ||||| | ||| Sbjct 21668591 ACA-AGTCTGAGAATGTTCAGGATTTGCTGCTGTTGGATGTCACTCCTCTTTCCCTTGGT 21668649 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 ||||||| | ||| || | ||||| || || | || ||||| || || | | Sbjct 21668650 ATTGAAACTGCTGGTGGAGTCATGACAGGCCTCATCAAGAGCAATACCATCATTCC-TAC 21668708 Query 475970 AAAAAATCAAAAGTATTTTCC-ACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 || | | || ||| | || |||||||| ||||| | ||| ||| || | Sbjct 21668709 TAAGCAGACACAGACTTTCACTACATATTCTGACAATCAGCCCGGTGTGCTCATTCAGGT 21668768 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA 476088 || |||||||||||| | || || ||||| ||| ||||||| ||| | ||| Sbjct 21668769 CTATGAAGGTGAAAGCGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTTAT 21668828 Query 476089 AGGTATTCCTC---CTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGA 476145 ||| || |||| | || ||| | || |||||||| |||||||| |||||||| ||||| Sbjct 21668829 AGGCATCCCTCCAGCAGCACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGA 21668888 Query 476146 TGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| ||||| || || ||||| ||||| ||||| Sbjct 21668889 TGCCAATGGCATCCTCAATGTCTCTGCTGTAGATAA 21668924 >seq223 Length=1816191 Score = 145 bits (160), Expect = 5e-29 Identities = 418/630 (66%), Gaps = 20/630 (3%) Strand=Plus/Minus Query 475560 CTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTT 475619 |||| | ||| | ||| |||| |||| ||||| | ||| |||||||||| | Sbjct 1409703 CTCTCTATGAGGAAATCGATTTCTATACCTCAATTACCTGTGCTCAATTTGAAGAATTAA 1409644 Query 475620 GTTCTGATCTCTTTAGAAAAACAAT-TGAACCCGTTGAACAAG-TTCTCAGAGATTCTAA 475677 | |||| || || || ||| | || |||| || | ||| |||| |||| |||| Sbjct 1409643 ATGCTGACCTGTTCC--AAGACACTCTGGACCCTTTAGAAAAGATTCTTCCAGATGCTAA 1409586 Query 475678 ACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAA 475737 | | ||||| ||||| ||||| | |||| || | || ||||| || ||||| || || Sbjct 1409585 ATTAGACAAGTCACAGATCCATAACATTGCCCTGATGGGTGGTTCTACCAGAATCCCCAA 1409526 Query 475738 AATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTA---AATGAAAGTGTAAA 475794 || | |||||| || | | || |||||| | ||| ||| | | Sbjct 1409525 GATTC---AGATGCTTCCACAAGACTTCTTCAACAAAAAGGAACTCAATAAAAACATTA- 1409470 Query 475795 TCCTG-ATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAAT 475853 |||| ||||| ||||||| | ||| || |||||||| | | ||| || | || | Sbjct 1409469 -CCTGGATGAAACTGTTGCTTGTGGTGCAGCTGTCCAGGTGGTCATTCTACCTGGAGACA 1409411 Query 475854 CAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || | ||||| | | || | | || | || || ||||| ||||| | ||| || Sbjct 1409410 -AGTCTGAGAATGTTCAGGATTTGCTGCTCTTGGATGTCACTCCTCTTTCCCTTGGTATT 1409352 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| | ||| || |||||||| || | ||| |||| ||||||| | |||| Sbjct 1409351 GAAACTGCTGGTGGAGTTATGACTGCCCTCAAGCACA---ATACCACTATCCC-TACAAA 1409296 Query 475973 AAATCAAAAGTATTTTCC-ACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | | || ||| | ||||| ||||| ||||| | ||| ||| || ||| Sbjct 1409295 GCAGACACAGACTTTCACTACTTACTCTGACAATCAGTTCAGTGTGCTCATTCAGGTCTA 1409236 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 | |||||||||| | || || ||||| ||| ||||||| ||| | |||| ||| Sbjct 1409235 TTAAGGTGAAAGGGCCATGACCAAGGATAACAACCTGCTTGGAATGTTTGAACTTGCAGG 1409176 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || ||||| || ||| | || ||||||| ||| |||| ||||||||||||||||| || Sbjct 1409175 CATCCCTCCAGCACCCTGTGGTGTTCCTCGGATTAAAGTCACTTTTGATATTGATGCCAA 1409116 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || || ||||| ||||| ||||| Sbjct 1409115 TGGCATCCTCAATGTCTCTGCTGTAGATAA 1409086 >seq19 Length=22253760 Score = 111 bits (122), Expect = 1e-18 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| |||||||||||| | || || ||||| ||| ||||||| ||| | ||| Sbjct 3249714 TCTATGAAGGTGAAAGGGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTTA 3249773 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 ||| || ||||| || ||| | || |||||||| |||||||| |||||||| ||||||| Sbjct 3249774 CAGGCATCCCTCCAGCACCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGACATTGATG 3249833 Query 476148 CAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 | ||||| || |||||||| ||||| ||||| Sbjct 3249834 CCAATGGCATCCTTAATGTCTCTGCTGTAGATAA 3249867 Score = 107 bits (118), Expect = 1e-17 Identities = 224/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| ||||||| || ||||| | || || || || || | | | |||| || Sbjct 3248758 ACTGCCTGTGAACAGGCAAAGCGCACCCTCTCCTCCAGCACCCAGGCCAGTATTGAGATT 3248817 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| |||||||||| |||| ||||| | ||| ||| ||||| Sbjct 3248818 GATTCTCTCTATGAGGGAATTGATTTCTATACCTCCATTACCCGTGCTCGATTCGAAGAA 3248877 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || || || | || || || ||| | | || ||||| || Sbjct 3248878 TTGAATGCTGACCTGTTCCGAGGCACTCTGGACCCTGTAGAAAAGGCCCTTCGAGATGCT 3248937 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| ||||| ||||||| ||||| || || || ||||| || ||||| || Sbjct 3248938 AAACTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCTACCAGAATCCCC 3248997 Query 475736 AAAATAAGAGAAATGCTTT--CATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTA 475792 || || |||| |||| || | | || ||||| ||| | | || | || | Sbjct 3248998 AAGATTC-AGAA--GCTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAACAAGAGCATT 3249054 Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGC 475821 || ||||||||||||||||| ||||| || Sbjct 3249055 AACCCTGATGAAGCTGTTGCTTATGGTGC 3249083 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || || || || ||||||||||| || || ||||| ||||||| Sbjct 3248303 ATGCTGTGGTCACCGTGCCGGCCTACTTCAATGATTCTCAGCGACAGGCAACAAAAGATG 3248362 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| || || ||||| | || ||||| ||||||||||| || || || Sbjct 3248363 CTGGGACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAACCAACTGCTGCTGCTA 3248422 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || ||||| Sbjct 3248423 TTGCTTATGGGCTAGACAAGAA 3248444 Score = 98.7 bits (108), Expect = 6e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| ||||| | ||| | || |||| || Sbjct 3247563 TGCAGTTGGTATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGGAA 3247622 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || |||||||||||||| ||||| |||| || ||| ||||| |||| || Sbjct 3247623 GGTGGAGATTATTGCCAATGACCAGGGTAACCGAACCACGCCAAGCTATGTAGCTTTCAC 3247682 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || |||| | |||||||||||||| || |||| Sbjct 3247683 GGACACAGAACGATTAATTGGAGATGCTGCGAAGAATCA 3247721 >seq2 Length=60928133 Score = 96.9 bits (106), Expect = 2e-14 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| ||||| | ||| | || |||| | Sbjct 56427912 TGCAGTTGGTATTGATCTTGGCACCACCTACTCCTGTGTGGATGTCTTCCAGCATGGAAT 56427971 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||||||| ||||||||| |||| |||| || ||| ||||| ||||| Sbjct 56427972 GGTGGAGATAATTGGCAATGACCAGGGTATCTGAACCACTCCAAGCAATGTTGATTTTAG 56428031 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || |||| | ||| | ||||||| || | | | |||| || ||| || Sbjct 56428032 TGACACAGAACGATTAATTCGGGATGCTGTGAAGACTTAGGTTGCAATGAACCCTACCAA 56428091 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || ||||| |||| ||| | ||||||| || | |||||| | | | ||||| Sbjct 56428092 CACAGTTTTTTATGCCAAATGTCTGATTGGATATAGGATCGATGATGCTGTTATTCAATC 56428151 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTG 474595 ||||||| || || ||||| | |||| Sbjct 56428152 TGATATGAAGCACTGACCTTTCATGGTG 56428179 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || | |||||| || |||||| |||| | || ||||| ||| ||| Sbjct 56428429 ATGCTGTGGTCACAGTGCTAGCATACTTCAATGATCCTCAGCAACAGGCAACAAAATATG 56428488 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| | | ||||| | || || || ||||||||||| || || || Sbjct 56428489 CTGGAACTATTGCTGACTTCAATGTGCTTCGAATCATCAATGAACCAACTGCTGCTGCTG 56428548 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||| |||| || |||||||| Sbjct 56428549 TTGCTAATGGGCTAGATAAGAA 56428570 >seq88 Length=9234670 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || | ||| |||||||| || || | || || |||||||||||||||||||| Sbjct 4564127 ATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTT 4564186 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| ||||| || | | || | || || || || Sbjct 4564187 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 4564246 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || ||||| |||||||| || Sbjct 4564247 GGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 4564279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267257646999632