Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 268 1e-66 seq50 147 3e-30 seq6 116 4e-21 seq56 89.7 6e-13 >seq1 Length=79790405 Score = 268 bits (296), Expect = 1e-66 Identities = 658/989 (67%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || ||||| || ||| || ||||| || Sbjct 41369520 CAGATGCTCATCCAAACACTGGATGGCAAAGGGATCAACATCCATGTCAAACTTATTGGC 41369461 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | |||||| | || | || |||||| || ||| || | || || || || || Sbjct 41369460 GAAAAAATGGTGCGTGT---GAAGCATCCAGCCCAAGTCACCAGCTCCAAAAACACACAC 41369404 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || |||| || ||||| |||| ||||| | ||||| ||||| Sbjct 41369403 AGAGCGCACGTGGACCCCACTGCATGGTGGGTAAGGAGCGCCTTTGGAAACGTCGCCTTC 41369344 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| |||||||| || | || | ||| || || ||| || || | Sbjct 41369343 AAAGTATTGCCACTTGACAAACCTAGCGACAGCATTCATATCAGACAAGTCATACTTATG 41369284 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | | |||| | || || || | || | |||||||| || | | Sbjct 41369283 GCTTGAGGGGAGAGAGCCAGGGA-CTCCAGGGATCCTTTGGACAGTGGCCCAGAGATACT 41369225 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGC- 160409 | || |||||||| ||||||| | ||| ||||||||| | ||| | | | | Sbjct 41369224 CATCCGGGCTGTATGTGTCCTGTGCCCACGCCATGAACTTTTGGAT-ATCTTCATTTTCT 41369166 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG- 160468 || || | || || || | || || ||||| || ||||| || || | || Sbjct 41369165 AGCACATAGCCTACATATTCCCTACTGACTACGAAGTAGGCACTGCCTGAAAAAAGAGGA 41369106 Query 160469 --TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACC 160526 | || || |||| | | ||||| | || ||||| | || | || | || Sbjct 41369105 GTTTTGAGTGGAGGCTGTG---CTTTGGCTACCCCAGTGTTTGTCAGCTTCCCGTCAACG 41369049 Query 160527 AGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGA 160586 | || | ||| || ||||| || | ||||| | | ||||| || || || || Sbjct 41369048 ATGGCATATCGTTTTTTCCATCTCTCTTCCTTGTTCTGAGGCATCTTCTCAGTTTCCAGG 41368989 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 |||| | || || || || || | |||| || |||||||| || |||| || Sbjct 41368988 TTGTTTTCGCCCGAGAATGACTTGAGTGTCCTGACAATTTCTAGGTTGGTTTTGATAGGG 41368929 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCC 160706 || || |||| || | ||| |||| ||||||||| | || |||| || ||||||| Sbjct 41368928 AAATCCATACCACAAAGGTTGATCAAGTACTTCCAGCTTGCACTCATCCTGTACAGGTCC 41368869 Query 160707 CTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGT 160766 |||| || || | || |||||||| || |||||||| || || || || |||| || Sbjct 41368868 TTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATGCATAAACAACACTCTCCAGC 41368809 Query 160767 TTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACC---GCCAGAAAG 160823 | |||||||||||||||||| | || || ||| | || |||| |||| || |||||| Sbjct 41368808 TGGCTGGCCACAAAGACGTTACCAAAGCAGGACGCAATGCCCATCACCGCGGCTAGAAAG 41368749 Query 160824 AACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 || || || ||| ||||||||| | ||| || | ||||||||| |||||| Sbjct 41368748 ---GGCTCCTCGGCTTTTTTGTCCACGTGGATGCAGTAGAAATTCTGAGGCATATAGATG 41368692 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 ||||| || | ||| || | ||| || ||||| || || | ||| || || || || || Sbjct 41368691 GCCCTCAGGAGCCTGTCCAGCATTTCGATCTTGTGGTGAACCACTATGGAATACGCAATT 41368632 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 ||||| | ||| || || |||| | | | || || ||| || |||| ||| Sbjct 41368631 GGAAAGCCTACCTCTTCTTTGCTAAGGGGCTCTACAATATATTTGCGCATCCTGATGAAA 41368572 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || || |||||||| ||||| Sbjct 41368571 GAGGCACAGTCACGGGTCATGTTTATATA 41368543 >seq50 Length=13914209 Score = 147 bits (162), Expect = 3e-30 Identities = 227/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || | |||||||||||||| ||| Sbjct 3550854 TAGAGGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAAACAAACGTGTTGAAGAGACAC 3550913 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| |||||||||| || |||| || || ||||| || || | ||| ||| | ||| Sbjct 3550914 ATGTAGCAGCCTTCATCATCCAGTGTTGTGTTCCAGAAAGTGATGCTTGTGTTCCAGAGT 3550973 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | ||| |||| | ||| ||||||||||| || ||||| Sbjct 3550974 CCCAGCTCAGTGATGTTTACCCTGTCTCTATATGCAGGCTGAACTACAACCCCATGGTTT 3551033 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | ||| | ||| ||||||| || ||||| || || | |||||||| || || ||| Sbjct 3551034 TTGCTATAAGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATC 3551093 Query 168390 AGAACCTCTT--TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTT 168447 | ||| | || | | ||| ||||||| | || || || |||| |||||| | Sbjct 3551094 AATGGCTCCTGGGATTG--TTTCAGAGAACATCGTAAGGATGCAGGTGTGTGCAGCAGCT 3551151 Query 168448 CTCGCTCATCTTGAGTTACGAC 168469 || ||||| || || || || Sbjct 3551152 TTCTTTCATCCTGGGTCACCAC 3551173 >seq6 Length=30421869 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 176209 TGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCAT 176268 |||||||| | || ||| | ||||||||| | | |||| || |||| |||||| | Sbjct 29373984 TGTTGTTTTTGTCAAGTTCCTTCAGATATTTTGCCAACTCACTGGGAGAGTTATAATCTT 29374043 Query 176269 TAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTA 176328 ||||| || || | | | |||||| || || ||||| |||| || || ||||||| Sbjct 29374044 CCACATGAATGAACGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGTCCTA 29374103 Query 176329 AAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAG 176388 || | ||||| | | || || |||| ||||| |||||||| |||||| || Sbjct 29374104 GGACAACAGGTACTGAGCCAGCCAAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTT 29374163 Query 176389 TGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 ||||||||||||||||||||| | ||| || ||||| Sbjct 29374164 TGTGAATTGAGTTTTCAAAAGAAAGATAAAATTTACA 29374200 >seq56 Length=11875786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 224/340 (66%), Gaps = 3/340 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| || |||| ||| || | ||| || | | || |||| || | | ||| || | Sbjct 1834192 TGTGACGTAGATATTCTTCTAAACACTGAAGGACGTTATCGTCTACCTTTGGGTCAAACT 1834133 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || ||||| || |||||| || | |||||||| ||| || || || | | Sbjct 1834132 TGTTGGCCAAGAGATGATG---GTTCTGAAGTAGCCAGTGCAGGTCCCCAGATCCATAAA 1834076 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| | || ||| | ||| |||||| | ||| | || || || | | || Sbjct 1834075 TACAGACAGCCCGCTGGTGGATGCCTGAGCAAGGTGTGTAGGGCGCCCCCCTCTCAATGT 1834016 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || |||| | ||||||||| | ||| || || | |||||| ||| ||| Sbjct 1834015 CTCCCTCGTGGCTCTGCCACTTGGTTAGCCTCGCAATAGATCTCATGTCTGAGAGGTCAA 1833956 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 |||||| || |||| | | || || | | | |||||| ||||||||||| | Sbjct 1833955 ATTTGTGGTGCAAGGGAGCTGATCCAGGCATCCATGAGGCACGCTGGAGGGTGGCCCATA 1833896 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 ||||||| || || || || ||||| || |||||| || Sbjct 1833895 GGTGTTCATCAGGACTATAGGTGTCTTTTACCCATTCAAT 1833856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577064187783840