Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq88 102 2e-16 >seq88 Length=9234670 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| || || || |||| |||| | |||||||||||||| | || Sbjct 4564100 GATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCT 4564159 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || |||||||| ||||| || || || |||||||| ||||| Sbjct 4564160 CTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGT 4564219 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | ||| || || || || |||||||| || || | || || | || ||||| Sbjct 4564220 GTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 4564279 Query 192534 CATTTT 192539 ||| || Sbjct 4564280 CATGTT 4564285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984209008343400