Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq236 158 1e-32 seq7 158 1e-32 seq11 150 2e-30 seq166 149 8e-30 seq11107 109 7e-18 >seq236 Length=1459171 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||||||| ||| | ||||||||| || ||||||||||| || | || Sbjct 1235875 GCTTGGCCAGTTCGCCGGGCAGCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGACGTGA 1235816 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 1235815 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGCCCGCGATGCGCTCGAAGA 1235756 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1235755 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 1235696 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1235695 GTACCTGCTTCAGCACCTTGTA 1235674 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 1228675 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1228616 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 1228615 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGCCCGCGATGCGCTCGAAGA 1228556 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1228555 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 1228496 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1228495 GTACCTGCTTCAGCACCTTGTA 1228474 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||||||||| ||||||||||| || | || Sbjct 942703 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 942762 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 942763 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCTCCAGCGATGCGCTCGAAGA 942822 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 942823 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 942882 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 942883 GTACCTGCTTTAGTACCTTGTA 942904 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||||||| || ||||||||||| || | || Sbjct 969500 GCTTGGCCAGCTCCCCGGGTAGCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGACGTGA 969441 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 969440 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCTCCCGCGATGCGCTCGAAGA 969381 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 969380 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 969321 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| || || |||||||| Sbjct 969320 GTACCTGTTTCAGTACCTTGTA 969299 >seq7 Length=28733031 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 28482797 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 28482738 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||||| ||||||| |||| | Sbjct 28482737 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCGCCCGCGATGCGCTCGAAGA 28482678 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 28482677 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 28482618 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 28482617 GTACCTGCTTCAGCACCTTGTA 28482596 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 28487426 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 28487367 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||||| ||||||| |||| | Sbjct 28487366 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCGCCCGCGATGCGCTCGAAGA 28487307 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 28487306 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 28487247 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 28487246 GTACCTGCTTCAGCACCTTGTA 28487225 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||||||||| || ||||||||||| || | || Sbjct 28318375 GCTTGGCCAGTTCCCCGGGCAGCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGACGTGA 28318434 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 28318435 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCTCCAGCGATGCGCTCGAAGA 28318494 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 28318495 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 28318554 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 28318555 GTACCTGCTTCAGCACCTTGTA 28318576 Score = 122 bits (134), Expect = 1e-21 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 28114566 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 28114507 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| | ||||||| |||| | Sbjct 28114506 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGCCGGCGATGCGCTCGAAGA 28114447 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | ||||| || ||||| | ||| | ||| ||||||||| ||| || | Sbjct 28114446 TGTCCGTCACAAAGGAATTCATAATGCTCATGGCCTTTGAGGAGATGCCGGTGTCCGGAT 28114387 Query 1254523 GCACCTGCTTGAGCACCTTGTAGAT 1254547 |||||||||| ||||| || ||||| Sbjct 28114386 GCACCTGCTTCAGCACTTTATAGAT 28114362 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| || | || Sbjct 28458044 GCTTGGCCAGCTCCCCGGGAAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 28458103 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || ||||||| ||||||| |||| | Sbjct 28458104 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGAGAGGCCTCGCCCGCGATGCGCTCGAAGA 28458163 Query 1254463 TGTCGTTGACAAACGAGTT 1254481 |||||||||| |||||||| Sbjct 28458164 TGTCGTTGACGAACGAGTT 28458182 >seq11 Length=24937227 Score = 150 bits (166), Expect = 2e-30 Identities = 158/205 (77%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGA--TCTCGCG-CGTGC 1254399 || ||||||| || ||| ||| | ||| |||||||| ||||| | ||||| | |||| Sbjct 18042922 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACTTCTCGGGACGTG- 18042864 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| Sbjct 18042863 --ATAGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGA 18042806 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| || |||||||||| ||| | |||| |||||||| ||||| Sbjct 18042805 AAATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGG 18042746 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||||||| ||||||||||| Sbjct 18042745 GGTGCACCTGCTTCAGCACCTTGTA 18042721 Score = 150 bits (166), Expect = 2e-30 Identities = 158/205 (77%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGA--TCTCGCG-CGTGC 1254399 || ||||||| || ||| ||| | ||| |||||||| ||||| | ||||| | |||| Sbjct 18047363 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACTTCTCGGGACGTGA 18047422 Query 1254400 CGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| | |||||||| | |||||||| ||| ||||||| || ||||||| |||| Sbjct 18047423 TGGTCGAG---CGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGA 18047479 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| || |||||||||| ||| | |||| |||||||| ||||| Sbjct 18047480 AAATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGG 18047539 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||||||| ||||||||||| Sbjct 18047540 GGTGCACCTGCTTCAGCACCTTGTA 18047564 >seq166 Length=3799537 Score = 149 bits (164), Expect = 8e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||||||||| ||||||||||| || | ||| || Sbjct 2227130 GCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTC 2227189 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| ||| |||||| | ||||||| |||| |||||| Sbjct 2227190 GAACGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAAATGTCG 2227249 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || |||||||||| ||| | |||| ||||||||| ||||||||||||| Sbjct 2227250 TTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCGGGGTGCACC 2227309 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 2227310 TGCTTCAGCACCTTGTA 2227326 Score = 143 bits (158), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||||||||| ||||||||||| || | ||| || Sbjct 2183991 GCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTC 2184050 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| | |||||||| ||| |||||| ||||||| |||| |||||| Sbjct 2184051 GAACGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCG 2184110 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || || |||||||||| ||| | |||| ||||||||| ||||||||||||| Sbjct 2184111 TTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACC 2184170 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 2184171 TGCTTCAGCACCTTGTA 2184187 >seq11107 Length=3268 Score = 109 bits (120), Expect = 7e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || ||||||||| | ||||| Sbjct 2485 CAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAATGCGC 2544 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || |||||| | ||||||| |||| ||||| | ||||| || ||||| | Sbjct 2545 CAGGCGAGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCCGTCACAAAGGAATTCATAAT 2604 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||| | ||| ||||||||| ||| || ||||||||||| ||||| || ||||| Sbjct 2605 GCTCATGGCCTTTGAGGAGATGCCGGTGTCCGGATGCACCTGCTTCAGCACTTTATAGAT 2664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105376122350428