Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq11 132 3e-26 seq15 116 2e-21 seq44 104 2e-17 seq34 98.7 6e-16 >seq11 Length=24937227 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| || || || || |||| |||| Sbjct 14395180 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 14395239 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| ||||| |||||||| | || | |||||||| || Sbjct 14395240 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 14395299 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | ||| ||| ||| || || | ||| |||||| Sbjct 14395300 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 14395359 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || |||||||| || |||||||||||| Sbjct 14395360 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 14395392 >seq15 Length=24491037 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||||| | |||| ||| ||||| ||||| |||| ||| || |||| || | Sbjct 10712780 AGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCC 10712839 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || || ||||||| |||||||| | || | || | ||| || Sbjct 10712840 TCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCT 10712899 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||| |||||| |||| || |||| Sbjct 10712900 TGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGG 10712957 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| ||||||||||||||| Sbjct 10712958 TCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 10712992 >seq44 Length=14409287 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || | ||| ||||| | ||| ||||| || ||| |||| |||| Sbjct 3701609 AGCACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCC 3701668 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || || ||||||| |||| ||| | || | || ||||| | Sbjct 3701669 TCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATTT 3701728 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||| || ||| |||| | |||| Sbjct 3701729 TGGATCTTGGCCTTGAC--ATTCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGG 3701786 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||| | |||||||| ||||||||||||||| Sbjct 3701787 CCTTGCCCATCAGGGTCTTCACAAAGATCTGCATG 3701821 >seq34 Length=19385306 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | |||| ||| ||||| ||||| |||||||| ||| | | |||| Sbjct 7139858 AGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCATCC 7139799 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || || ||||||| |||||||| || | || ||||| | Sbjct 7139798 TCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATAT 7139739 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||| ||||| |||| || |||| Sbjct 7139738 TGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGAACTCAAGAGTGATGG 7139681 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| | |||||| ||||||||||||||| Sbjct 7139680 TCTTGCCCAACAAGGTCTTCACAAAGATCTGCATG 7139646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325607521818596