Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq36 91.5 1e-13 >seq36 Length=18054249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 20222 GATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGGCTTTGCCTAAAGTCATT 20281 || |||||||| ||| || ||| ||| | |||||||| || ||| | || | |||| | Sbjct 2416541 GACCTTGGAGACATTCTGAAGAAACACCTAAGATGGCTAAAAGCTCTCCCGAGGGTCACT 2416482 Query 20282 CCATTTTACGCCGTTAAGGCCCAG-AACGACGAGAGAGTCCTC---AAGACCCTAGCTGC 20337 || ||||| || || || || || ||| |||| | | || ||| |||| || Sbjct 2416481 CCCTTTTATGCAGTCAAA----AGTAATGACAGCAGAGCCATAGTGAACACCTTAGCCGC 2416426 Query 20338 CCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTACTGCAAAATCTGGG 20397 | || || || ||||||||||| || ||| || || ||||| |||| || || Sbjct 2416425 CATTGGGACAGGTTTTGACTGTGCAAGCAAGACTGAAATACAGTTGGTGCAGGTGCTCGG 2416366 Query 20398 AGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCTTCGCATATAACGTA 20457 || | | || ||||| | | ||| ||||||||||| || || || || | ||| Sbjct 2416365 GGTGCCTCCTGAGAGGATCATCTATGCAAATCCTTGTAAACAAGTGTCTCAGATCAAGTA 2416306 Query 20458 TGCCGCTCA--AACTGGAGTAAGGCTGATGACTTTTGATAGTGA 20499 |||||| || ||| ||||| | ||||||| ||||| ||||| Sbjct 2416305 TGCCGC-CAGTAAC-GGAGTCCAGATGATGACATTTGACAGTGA 2416264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463421114829120