Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq15 125 1e-23 seq88 111 3e-19 seq215 95.1 2e-14 >seq15 Length=24491037 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || |||||||| || || || | || || || | || | || || || || ||| Sbjct 10712795 GTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCA 10712854 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| || ||||| || || || || || || |||| ||||||||| ||||| || || Sbjct 10712855 GCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTG 10712914 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||| || || || ||| | || || || || | ||| || ||||||||||||| ||| Sbjct 10712915 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTC 10712974 Query 82794 TTTACAAATATCTGCAT 82810 || ||||| |||||||| Sbjct 10712975 TTCACAAAGATCTGCAT 10712991 >seq88 Length=9234670 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| || || || || || || || || || ||||| | | | || ||||| || | Sbjct 4564079 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAGCTT 4564138 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || || || || || ||||| |||||||||||||| || ||||| Sbjct 4564139 CTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 4564198 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||||||||||| || || || ||||| || || | || || || || || || Sbjct 4564199 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGT 4564258 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 4564259 AAGGGTCTTCACGAAAATCTGCAT 4564282 >seq215 Length=1997539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| || || || || || ||||| |||||||||||||| || ||||| || ||| Sbjct 1382440 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1382499 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || || || ||||| || || | || || || || || || | ||| Sbjct 1382500 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTC 1382559 Query 82794 TTTACAAATATCTGCAT 82810 || || || |||||||| Sbjct 1382560 TTCACGAAAATCTGCAT 1382576 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||||||||| ||||| || || ||||| || || || ||| | || || || || Sbjct 604603 CCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 604544 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 604543 AGAGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCAT 604500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981556938563076