Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 141 9e-29 seq15 111 2e-19 seq88 105 6e-18 seq83 98.7 1e-15 seq33 98.7 1e-15 seq86 93.3 4e-14 seq34 89.7 5e-13 seq215 86.0 6e-12 seq44 84.2 2e-11 seq19235 82.4 7e-11 >seq11 Length=24937227 Score = 141 bits (156), Expect = 9e-29 Identities = 153/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 14395194 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 14395252 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||| |||||||| ||||| || |||||| || Sbjct 14395253 CTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 14395312 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 14395313 TGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 14395372 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 14395373 TCTTCACGAAGATCTGCATG 14395392 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| |||||||||||||| |||||||| ||||| || |||||| ||||| | Sbjct 14396128 ATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTT 14396187 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| |||||||||| || | ||||| ||| |||||||||||||| || ||| Sbjct 14396188 TCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACG 14396247 Query 133650 AAAATCTGCAT 133660 || || ||||| Sbjct 14396248 AAGATTTGCAT 14396258 >seq15 Length=24491037 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCT 133518 || ||||||||||||||| || ||||| | || | || | | | |||| ||||||| Sbjct 10712791 TAAGGTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCAC-CCTCCAGCTGCT 10712849 Query 133519 TGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTT 133578 |||| || | || || | ||||||||| || || ||||||| ||| || |||||| Sbjct 10712850 TGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGG 10712909 Query 133579 GCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||||| | ||| | ||||| ||||||| || || | |||| ||| ||||| |||| Sbjct 10712910 CCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCA 10712969 Query 133639 GAGTTTTTACGAAAATCTGCATG 133661 | || || || || ||||||||| Sbjct 10712970 GGGTCTTCACAAAGATCTGCATG 10712992 >seq88 Length=9234670 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || || |||| | | | || || |||| ||| | Sbjct 4564085 GGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCA-TCTTCCAGCTTCTTAC 4564143 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| || |||||||| || |||||| || Sbjct 4564144 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 4564203 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | ||| || || |||| |||| |||||| || || || | Sbjct 4564204 TTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGG 4564263 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||||||||||||| Sbjct 4564264 TCTTCACGAAAATCTGCATG 4564283 >seq83 Length=9922814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| |||| |||| | || |||||||| | ||| | || || ||||||||||| Sbjct 4819853 GGTAGACTGTTTCAGGATGTTGTAATCAGAGAGAGTGCAGACATCTTCCAGCTGCTTGCC 4819794 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||| ||| || |||| ||||| | |||||| ||| Sbjct 4819793 CGCAAAGATGAGTTGCTGCTGGGGGGGGTGGGTGCCCTCCTTAGCCTGGATCTTGGCCTT 4819734 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 4819733 CACATTCTGGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 4819674 Query 133643 TTTTACGAAAATCTGCA 133659 || ||||| || |||| Sbjct 4819673 CTTCACGAAGATTTGCA 4819657 >seq33 Length=18013292 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||| | || ||||| || || ||| ||||| |||||||||| Sbjct 16639512 GGTGGACTCTTTCGGGATGTTGTAGTCCAACAGGGTGTGGTCATCCTCCAGCTGCTTGCT 16639453 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| | |||||| ||||||| || |||||| ||| Sbjct 16639452 GGCAAATATCAGCCTCTGCTGGTCAGATGGGATGACTTCCTTATCTTGGATCTTGGTCTT 16639393 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| | ||| ||||||| || || | |||| ||| ||||| |||| || Sbjct 16639392 GACATTCTCAATAGAGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCATCAGGGT 16639333 Query 133643 TTTTACGAAAATCT 133656 || || || |||| Sbjct 16639332 CTTCACAAAGATCT 16639319 >seq86 Length=10151807 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| |||||| ||| || ||||||| | ||| | || || || |||||||| Sbjct 3693155 GGTGAACTCTTCCTGGATGCTGTAATCAGAAAGAGTGCAGTCATCTTCCAGTTGCTTGCC 3693214 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||| ||| || |||||||| || || || |||||| | | Sbjct 3693215 GGCAAAGATGAGTTGCTGTTGGAGGGCGGGGATGCCCTCTTTATCCTGGATCTTGACCCT 3693274 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || || ||||| |||| ||||| || | ||||| ||| ||||||||||| || Sbjct 3693275 GACATTCTGAATGGTGTCACTGGGTTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGT 3693334 Query 133643 TTTTACGAAAATCTGC 133658 ||||| ||||| ||| Sbjct 3693335 TTTTATTAAAATTTGC 3693350 >seq34 Length=19385306 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || || || | | | ||||| | || Sbjct 7139850 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCA-TCCTCCACCT 7139792 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || | ||||||||| | || ||||||||||| | ||||| Sbjct 7139791 GCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATATTGGATCT 7139732 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| ||||||| | || | |||| ||| ||||| Sbjct 7139731 TGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAACTCAAGAGTGATGGTCTTGCCCA 7139672 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || ||||||||| Sbjct 7139671 ACAAGGTCTTCACAAAGATCTGCATG 7139646 >seq215 Length=1997539 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| ||||||||| ||||| || |||||||| || |||||| ||| | | Sbjct 1382446 ATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 1382505 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| | ||| || || |||| |||| |||||| || || || || || ||| Sbjct 1382506 TCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACG 1382565 Query 133650 AAAATCTGCATG 133661 |||||||||||| Sbjct 1382566 AAAATCTGCATG 1382577 >seq44 Length=14409287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||||||| | ||||| || || ||| | ||||| ||||||||||| Sbjct 3701623 GGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTGCGGGCATCCTCCAGCTGCTTGCC 3701682 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | ||||| ||| || || ||||||||||| | |||||| ||| Sbjct 3701683 AGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCTTCCTTATTTTGGATCTTGGCCTT 3701742 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| |||||| || || | ||| || ||||| |||| || Sbjct 3701743 GACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGATTGATGGCCTTGCCCATCAGGGT 3701802 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 3701803 CTTCACAAAGATCTGCATG 3701821 >seq19235 Length=1210 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| |||||||||| || ||||| || || |||| |||| ||||||||| | Sbjct 834 GGTGTACTCTTTCTGGATGTTGTAGTCAGACAGGGTGGGGCCATCCTTCAGCTGCTTGTC 893 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||| ||||||||| | ||||||||||||||||| ||| || ||| Sbjct 894 AGCA-ACATAAGCTACTGCTGGTCCAGTGGGATGCCTTCCTTGTCTTCGATTTTGGCCTT 952 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || || || |||| || | || || || ||| ||||| |||| | Sbjct 953 GATATTCTCCATGGTCTCACTGAGCTCAACCTTGAGGGCGATGGTCTTGCCCATCAGGAT 1012 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || | ||| || ||||| || Sbjct 1013 CTTCATGAAGATAGGCATGTCT 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483290977344160