Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 165 9e-36 seq6 116 4e-21 >seq1 Length=79790405 Score = 165 bits (182), Expect = 9e-36 Identities = 641/1000 (64%), Gaps = 23/1000 (2%) Strand=Plus/Minus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119 ||||| ||||| | |||| ||| || | |||||||| || || || ||| Sbjct 41369535 CAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGGGATCAACATCCAT 41369476 Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 || ||||| || ||||| | || |||| || || |||| | || || | Sbjct 41369475 GTCAAACTTATTGGCGAAAAAATGGTGCGTGTGAAGCA---TCCAGCCCAAGTCACCAGC 41369419 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || ||||| || |||||||| || || ||||| || || || | || || | Sbjct 41369418 TCCAAAAACACACACAGAGCGCACGTGGACCCCACTGCATGGTGGGTAAGGAGCGCCTTT 41369359 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | || || || || ||||||||||||| || ||||||| || ||| | ||| || || Sbjct 41369358 GGAAACGTCGCCTTCAAAGTATTGCCACTTGACAAACCTAGCGACAGCATTCATATCAGA 41369299 Query 162300 GGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||| ||||| | ||| || | | ||||| || || || | || || | ||| Sbjct 41369298 CAAGTCATACTTATGGCTTGAGGGGAGAGAGCCAGGGACTCCAGGGATCCTTTGGACAGT 41369239 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 ||||| || | || || || || || || |||| | |||| ||||||||| || Sbjct 41369238 GGCCCAGAGATACTCATCCGGGCTGTATGTGTCCTGTGCCCACGCCATGAACTTTTGGAT 41369179 Query 162420 CGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC 162479 || || | ||| | || || || ||| | || | ||||| || || || Sbjct 41369178 ATCTTCATTTTCTAGCACATAGCCTACATATTCCCTACTGACTACGAAGTAGGCACTGCC 41369119 Query 162480 AGAAAACACGGG---TATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||| | || | || || ||||| | ||||| || || ||||| | Sbjct 41369118 TGAAAAAAGAGGAGTTTTGAGT---GGAGGCTGTGCTTTGGCTACCCCAGTGTTTGTCAG 41369062 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA--GACGGG 162594 | | || || |||| | | || || |||| || |||| || || || | Sbjct 41369061 CTTCCCGTCAACGATGGCATATCGTTTTTTCCATCTC----TCTTCCTTGTTCTGAGGCA 41369006 Query 162595 TGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || || |||| ||| || | ||| || | || || |||| Sbjct 41369005 TCTTCTCAGTTTCCAGGTTGTTTTCGCCCGAGAATGACTTGAGTGTCCTGACAATTTCTA 41368946 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | ||||| || | || || || | || || || || || | || ||||| | | | Sbjct 41368945 GGTTGGTTTTGATAGGGAAATCCATACCACAAAGGTTGATCAAGTACTTCCAGCTTGCAC 41368886 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | | | |||||| |||| | |||||| || || ||||| || |||||||| || || | Sbjct 41368885 TCATCCTGTACAGGTCCTTCATACAGTTGAGGTCAGCCTGCACCCGACTCCAGGATGCAT 41368826 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || || ||||||| | |||| |||||||| || | || || || | || |||| Sbjct 41368825 AAACAACACTCTCCAGCTGGCTGGCCACAAAGACGTTACCAAAGCAGGACGCAATGCCCA 41368766 Query 162833 TCACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || | |||| || ||| ||||| | || ||||| | |||||| | || Sbjct 41368765 TCACCGCGGCT-AGAAAG--GGCTCCTCGGCTTTTTTGTCCACGTGGATGCAGTAGAAAT 41368709 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| |||||||||||||| | || || | ||| || ||||| ||||| |||| Sbjct 41368708 TCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCCAGCATTTCGATCTTGTGGTGAACCA 41368649 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACT 163009 | || |||||||| || || || | |||| || || || | | || || || | Sbjct 41368648 CTATGGAATACGCAATTGGAAAGCCTACCTCTTCTTTGCTAAGGGGCTCTACAATATATT 41368589 Query 163010 TGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 |||| ||| | || | |||||||| |||||||| Sbjct 41368588 TGCGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 41368549 >seq6 Length=30421869 Score = 116 bits (128), Expect = 4e-21 Identities = 380/581 (65%), Gaps = 11/581 (2%) Strand=Plus/Plus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| |||||||| | || | || | ||||| || || || || || ||| Sbjct 29374037 TAATCTTCCACATGAATGAACGAATCAGCTGGAATATAATTCTCATAGTTTTCCCTAGAT 29374096 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | ||| || || | ||||| | || |||| || | |||||| ||||| || || Sbjct 29374097 GGTCCTAGGACAACAGGTACTGAGCCAGCCAAAAATGCATTGTAGAGCTTTTCTGTGATG 29374156 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATAGTAGCGGG 177146 || || |||| | ||||| ||||| | ||||| |||||||| | ||||| ||| Sbjct 29374157 TAATCTTTGTGAATTGAGTTTTCAAAAGAAAGATAAAATTTACAAGTAGATATGGTGGGG 29374216 Query 177147 ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATG 177206 || | || | ||| | || ||||| | | | ||| || || || || | Sbjct 29374217 ATCAGGTTTTTATCATTCACGTATTCTCCAAAGGCTTGCCCATAGGTGTGGATTTCAACA 29374276 Query 177207 TGTTTACTGAGCTCTAGGTAGTATCTCGATC-TCACGTGGTCGTTGTTCCAATTGCTGAC 177265 || ||||| || || || || || | | | || ||| |||||| || || || Sbjct 29374277 CTCTTGCTGAGTTCGTTATAATA-CTTGACCCTGGCATGCTCGGGGTTCCAGTTACTCAC 29374335 Query 177266 GACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGGATTCGAT-ACTAATGCAGTGTCT 177323 ||||||||| || | ||| |||||| | || || ||| | || |||| | Sbjct 29374336 GACCCAGCACACCAGCTT-CTCTTTACTTGGCAC----TTCAAACACAAATGGTTTTGTG 29374390 Query 177324 CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTG 177383 || | ||| | | ||||| ||||| || ||||| || || || | || |||| || Sbjct 29374391 CTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGAATCACGGCGATAAGTTAGAGTC 29374450 Query 177384 AGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTT 177442 || ||||| | || || || || | ||| ||||| | | | |||| || |||||||| Sbjct 29374451 AGGTTGAACAAGTGCTCAATGCCACTCTTTTGAGGGG-TATGAGTGGGTGACTCTAAGTT 29374509 Query 177443 CATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTAT 177502 |||||| ||||| || ||||||| ||| || | | | ||||| | || |||| Sbjct 29374510 CATCCAAATCCATTTCTGAAAGGGTGGCCTAGCCTGCTGAGGTAAATTAGCCAGATCCCA 29374569 Query 177503 ACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTTTGT 177543 || || ||||||||||| | | || |||| || ||||| Sbjct 29374570 GCTAATGTCTCTGTGGTGTATCAGGACCGCATGGGATTTGT 29374610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578276662086400