Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq44 91.5 1e-13 seq88 86.0 6e-12 >seq44 Length=14409287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | ||||||||||||||||| ||| |||||| || ||||| ||| Sbjct 13233353 TACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 13233294 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | ||||| |||||||||| || ||| ||||| Sbjct 13233293 CTCTTCCGATTACAGGAATCTTTATAGAGCATGTATGGGGTGCCTGTCTC 13233244 >seq88 Length=9234670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| ||||||||||| || || || |||||| |||| ||||| | | Sbjct 4564089 GACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCTTCCAGCTTCTTACCAGCA 4564148 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| || ||||| ||||| || || || | Sbjct 4564149 AAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 4564208 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | || || || |||| ||| | ||||| || || || || || Sbjct 4564209 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTC 4564268 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 4564269 ACGAAAATCTGCATG 4564283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476483206062240