Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq50 206 3e-48 seq68 131 2e-25 seq95 116 4e-21 seq126 96.9 4e-15 >seq50 Length=13914209 Score = 206 bits (228), Expect = 3e-48 Identities = 237/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || ||||||| |||| || || ||| | ||| || ||| Sbjct 3551173 GTGGTGACCCAGGATGAAAGAAAGCTGCTGCACACACCTGCATCCTTACGATGTTCTCTG 3551114 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | || |||||| ||||||| || |||||||||| || | | ||||| Sbjct 3551113 AAACAATCCCAGGAGCCATTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 3551054 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| |||| ||||| || || ||||| || |||| |||| | Sbjct 3551053 AACATGGTCACTTATAGCAAAAACCATGGGGTTGTAGTTCAGCCTGCATATAGAGACAGG 3550994 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| |||| |||||| ||| ||| ||||||||| ||||| || || | Sbjct 3550993 GTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACTTTCTGGAACACAACACTG 3550934 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || || || ||||||| || ||||| ||||| |||| |||||||| ||||| || Sbjct 3550933 GATGATGAAGGCTGCTACATGTGTCTCTTCAACACGTTTGTTTCTGGGAAGATCTCAGGA 3550874 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 3550873 ACAGCCTGCCTCACCCTCT 3550855 Score = 149 bits (164), Expect = 7e-31 Identities = 180/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| || |||||||| Sbjct 3548684 GTACAGCCCATAGTATTCCTCCACTACAACTATTTTGAAGACCACCTAAATATCACCTGC 3548625 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || | |||||| | || |||| |||||| Sbjct 3548624 TCTGCGACTGCCCGCCCAGCCCCTGCCATCTCCTGGAAGGGCACTGGTTCAGGAATTGAG 3548565 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| || || ||||| ||||| | |||| Sbjct 3548564 AATAGTACCGAGAGTCACTTCCATTCAAATGGGACCACATCTGTCACCAGCATCCTCCGG 3548505 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || ||||| || ||||| || || | ||||||| Sbjct 3548504 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGTCAGGTTTTATACCTGGGG 3548445 Query 171633 AATGT 171637 | ||| Sbjct 3548444 ACTGT 3548440 >seq68 Length=11249547 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | ||| || | ||||||||| ||||| | |||||||| |||||||| Sbjct 11209795 CTTCAGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAA 11209854 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| || ||||| || |||||||| | Sbjct 11209855 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATT 11209914 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || || || || ||| ||||| || ||||| ||||| Sbjct 11209915 TACCACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 11209959 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || |||| Sbjct 11211899 GCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGC 11211957 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | ||| || ||||||| | ||| ||||| || | |||||| Sbjct 11211958 AGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTCACTCC 11212017 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGA 147439 ||||| ||| || || |||| | ||||| ||| ||| Sbjct 11212018 CTTGGAGGACAGTTCTTTAGCATTTGTGGAACCCTGGA 11212055 >seq95 Length=9356868 Score = 116 bits (128), Expect = 4e-21 Identities = 113/148 (76%), Gaps = 12/148 (8%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||| ||||| ||||| ||||||||| ||| || |||| Sbjct 743923 AGGGTTACTTGGGTTGCCAAACCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 743864 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| || || ||||||||| | |||| Sbjct 743863 TGCCCCAGGCAGAGAACCAC------------GGCCCAGAAATCAAGGAGCATTTGAACT 743816 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAG 178378 | || || || ||||| |||||||| || Sbjct 743815 CCCTAGGAGAGAAGCTGAAGACCCTCAG 743788 >seq126 Length=6434747 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||||||| ||||||| | || || ||||| Sbjct 213596 GTACTCCCTGGTGTTCATCATTGGAGTGATAGGCAATGTCCTGGTGGTTCTGGTGCTCAT 213655 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | | |||||||||| | | |||||||| ||||| ||| ||||||||||| | ||| Sbjct 213656 ACAACACAAGAGGCTTCGAAGCATGACCAGCATCTACCTACTCAACCTGGCCATCTCTGA 213715 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| | || || |||||| ||| Sbjct 213716 TCTGGTCTTCCTCTTCACATTACCTTTCTGGATTGACT 213753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| |||| ||||||| ||||||| | | || ||||| Sbjct 231170 GTACTCCATGGTGTTCATCATTGGAGTAATAGGCAATGTCCTGGTGGTTTTGGTGCTCAT 231229 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| ||| || | | |||||||| ||||| ||| |||||||||||| | ||| Sbjct 231230 GCAGTACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 231289 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | ||||| | || || |||||| ||| Sbjct 231290 TCTGGTCTTCCTCTTCACTTTGCCTTTCTGGATTGACT 231327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| |||| |||| ||||||||||| |||||||| | Sbjct 167066 TGGACCTGGCCATGCAGGTGACCGAGGTGATTGCCTATACCCACTGCTGTGTCAACCCAG 167007 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||| || || ||||| ||||||| ||||| Sbjct 167006 TCATTTATGCCTTTGTTGGCGAAAGGTTCC 166977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583331304297600