Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq236 185 1e-40 seq7 185 1e-40 seq11 159 5e-33 seq166 158 2e-32 seq11107 105 1e-16 >seq236 Length=1459171 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 1235674 TACAAGGTGCTGAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 1235727 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 1235728 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCTTCTCGC 1235787 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| || |||||| Sbjct 1235788 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCTGTGCGC 1235847 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 1235848 CTGCTGCTGCCCGGCGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1235896 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 1228474 TACAAGGTGCTGAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 1228527 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 1228528 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCTTCTCGC 1228587 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 1228588 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 1228647 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 1228648 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGTACCA 1228696 Score = 167 bits (184), Expect = 3e-35 Identities = 174/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 942904 TACAAGGTACTAAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 942851 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 942850 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCTGGAGAGGCCTCTCGC 942791 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 942790 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 942731 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| || || ||||||| ||||||||| ||||||||||| Sbjct 942730 CTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 942684 Score = 158 bits (174), Expect = 2e-32 Identities = 172/227 (76%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || || ||||| |||||| |||| |||| ||| |||| ||||| Sbjct 969299 TACAAGGTACTGAAACAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 969352 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 969353 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGAGAGGCCTCTCGC 969412 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| || |||||| Sbjct 969413 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCTGTGCGC 969472 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | | | ||| || ||||||| ||||||||| ||||||||||| Sbjct 969473 CTGCTGCTACCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 969519 >seq7 Length=28733031 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 28482596 TACAAGGTGCTGAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 28482649 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| ||||||| |||| Sbjct 28482650 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCTCGC 28482709 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 28482710 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 28482769 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 28482770 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 28482818 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 28487225 TACAAGGTGCTGAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 28487278 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| ||||||| |||| Sbjct 28487279 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCTCGC 28487338 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 28487339 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 28487398 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 28487399 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 28487447 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 28318576 TACAAGGTGCTGAAGCAGGTACACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 28318523 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 28318522 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCTGGAGAGGCCTCTCGC 28318463 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| || |||||| Sbjct 28318462 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCTGTGCGC 28318403 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| |||||| || ||||||||||||| Sbjct 28318402 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCTGTGTCCGAGGGCACCA 28318354 Score = 152 bits (168), Expect = 7e-31 Identities = 181/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || |||||| || ||||| ||||||||||| || |||| |||| Sbjct 28114350 TACTCCATCTATATCTATAAAGTGCTGAAGCAGGTGCATCCGGACACCGG-----CATC- 28114403 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| ||| ||||| || ||||| || ||||| | ||||| |||| ||||||| | Sbjct 28114404 TCCTCAAAGGCCATGAGCATTATGAATTCCTTTGTGACGGACATCTTCGAGCGCATCGCC 28114463 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| ||||||||||| | |||||||||| || ||| | || |||||| Sbjct 28114464 GGCGAGGCTTCTCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATC 28114523 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | ||| ||| || ||||||| ||||||||| ||||||||| Sbjct 28114524 CAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGC 28114583 Query 725139 ACCA 725142 |||| Sbjct 28114584 ACCA 28114587 Score = 140 bits (154), Expect = 5e-27 Identities = 127/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 724983 AACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGC 725042 |||||||| ||||||||||| |||| ||||||| ||||||| ||||||||||| Sbjct 28458182 AACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCCTCTCGCCTGGCGCAT 28458123 Query 725043 TCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATG 725102 | |||||||||| || ||| | || ||||||||||| |||||||||||| | | Sbjct 28458122 TACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTT 28458063 Query 725103 CGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 28458062 CCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 28458023 Score = 100 bits (110), Expect = 4e-15 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 ||||||| |||||| ||||||||||| | |||||||||| || ||| | Sbjct 28376183 CGCATCGCGGGCGAGGCTTCTCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCC 28376124 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || ||||||||||| || ||||||||| | ||| || || ||||||| ||||||||| Sbjct 28376123 CGGGAGATCCAGACGGCTGTGCGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCGTG 28376064 Query 725130 TCCGAGGGCACCA 725142 ||||||||||||| Sbjct 28376063 TCCGAGGGCACCA 28376051 >seq11 Length=24937227 Score = 159 bits (176), Expect = 5e-33 Identities = 176/230 (77%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 18042721 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 18042774 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 18042775 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 18042834 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG-CGCGAGA--TCCAGACCGCCGTG 725090 ||||||| | |||||||||| || || |||| | ||||| | ||||| |||||| Sbjct 18042835 CTGGCGCATTACAACAAGCGCTCGACTAT---CACGTCCCGAGAAGTGCAGACGGCCGTG 18042891 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| ||| ||||| ||||||||||| Sbjct 18042892 CGTCTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTTTCCGAGGGCAC 18042941 Score = 159 bits (176), Expect = 5e-33 Identities = 176/230 (77%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 18047564 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 18047511 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| || ||||||| ||| Sbjct 18047510 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 18047451 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG-CGCGAGA--TCCAGACCGCCGTG 725090 ||||||| | |||||||||| || ||| ||| | ||||| | ||||| |||||| Sbjct 18047450 CTGGCGCATTACAACAAGCGCTCGACCATC---ACGTCCCGAGAAGTGCAGACGGCCGTG 18047394 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| ||| ||||| ||||||||||| Sbjct 18047393 CGTCTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTTTCCGAGGGCAC 18047344 >seq166 Length=3799537 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| ||| |||| ||||| Sbjct 2227326 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCATG 2227273 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 2227272 GGCATCATGAACTCCTTCGTGAACGACATTTTCGAGCGCATCGCCGGCGAGGCTTCCCGC 2227213 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 2227212 CTGGCGCATTACAACAAGCGTTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 2227153 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||| | |||||||| || |||||||||| Sbjct 2227152 CTGCTGCTGCCCGGGGAGCTGGCTAAACACGCCGTTTCGGAGGGCACCA 2227104 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 2184187 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 2184134 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| |||||| ||| Sbjct 2184133 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCAGGCGAGGCTTCCCGC 2184074 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 2184073 CTGGCGCATTACAACAAGCGTTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 2184014 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||| | |||||||| || |||||||||| Sbjct 2184013 CTGCTGCTGCCCGGGGAGCTGGCTAAACACGCCGTTTCGGAGGGCACCA 2183965 >seq11107 Length=3268 Score = 105 bits (116), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || |||||| || ||||| ||||||||||| || |||| |||| Sbjct 2676 TACTCCATCTATATCTATAAAGTGCTGAAGCAGGTGCATCCGGACACCGG-----CATC- 2623 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| ||| ||||| || ||||| || ||||| | ||||| |||| ||||||| | Sbjct 2622 TCCTCAAAGGCCATGAGCATTATGAATTCCTTTGTGACGGACATCTTCGAGCGCATCGCC 2563 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 |||||| ||||||||||| | |||||||||| || ||| | || |||||| Sbjct 2562 GGCGAGGCTTCTCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATC 2503 Query 725079 CAGACCGCCGTGCGCCTG 725096 ||||| |||||||||||| Sbjct 2502 CAGACGGCCGTGCGCCTG 2485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175739028712408