Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq88 116 4e-21 seq11 89.7 5e-13 >seq88 Length=9234670 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| ||||| || ||||| |||||||| ||||||||||| | |||| ||| | Sbjct 4564065 AGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAC-GTGCG 4564123 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || |||| || || ||||| |||| | |||||| || || || || ||||| Sbjct 4564124 GCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTC 4564183 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| || ||||| || Sbjct 4564184 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 4564243 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| || || | || || |||||||| ||||| ||| Sbjct 4564244 GATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTTG 4564286 >seq11 Length=24937227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| || | || ||||| || || || || || || |||||||| || | Sbjct 14395165 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 14395224 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | |||||||| ||||| || Sbjct 14395225 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 14395284 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | ||||| Sbjct 14395285 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACC 14395344 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 14395345 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505262675259680