Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq40 109 8e-19 >seq40 Length=17264671 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 214001 ATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAA 214060 |||| || || || || ||||| || ||||| || ||| ||| | ||| | ||| Sbjct 16701813 ATTGGTGGAGAGGTGTATCCTCCCACAGTCAAAGACACCCAGGTGGAGATGATCTACCCT 16701872 Query 214061 CCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCC 214120 || | || || | |||| ||||| |||| | ||| | ||||| || ||||| Sbjct 16701873 CCTCACACCCCTGAGCACCTACGGTTCGCTGTGGGGCAGGAGGTCTTTGGTCTGGTGCCT 16701932 Query 214121 GGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTG 214180 ||| | ||| |||| || | ||||||||| ||||||||||||| || || || ||||| Sbjct 16701933 GGTCTGATGATGTATGCTACCATCTGGCTGCGAGAGCACAACAGAGTGTGTGATGTGCTT 16701992 Query 214181 AAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||| || || ||| |||| || | | | ||||||| Sbjct 16701993 AAACAGGAGCATCCTGAGTGGGACGATGAGCGGTTATTCCAGA 16702035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723146546828160