Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq270 120 4e-22 seq44 114 2e-20 >seq270 Length=930488 Score = 120 bits (132), Expect = 4e-22 Identities = 249/365 (68%), Gaps = 7/365 (2%) Strand=Plus/Plus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || || || ||| | || || || || |||| || | | Sbjct 655565 TTAATTCTTTCCAGTGGAGCCGAAGCCTCCCGAGCCCCTTTCAGTGTCATCCAGTGTCTT 655624 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || |||| | | || ||||| || |||| ||| || Sbjct 655625 AACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACC 655684 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | |||| || ||| || ||||||| || | ||| | || |||| ||| || || Sbjct 655685 TTTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCT 655744 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATCAAT-ACCT--TTTAGAGACAAACCCGA 37574 ||||||||| || || || ||| |||| ||||| || | | |||| | ||| || || Sbjct 655745 ATAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGA 655804 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 | ||||||| |||||||||||| || | || ||| |||| |||||||| | Sbjct 655805 GCGTGGAGCTACTCTTCCATAACACCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA- 655863 Query 37635 CAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| || |||||||| ||| | || |||||||| || || || || | || || ||| Sbjct 655864 CAA-TGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCC 655922 Query 37693 GCGGC 37697 || || Sbjct 655923 GCAGC 655927 >seq44 Length=14409287 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || ||||| |||||||| || |||||||| || ||||| | || Sbjct 13238026 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAC 13237967 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 13237966 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 13237907 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 13237906 TTTCTTACACCAT 13237894 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || ||||| ||||| || ||||||||||| ||| Sbjct 13226667 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 13226608 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| | |||||||| | | || | ||||||| Sbjct 13226607 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 13226548 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 13226547 ATATGCTGTGGTCTTTC 13226531 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 13220971 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 13220912 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| | || ||||| | ||||| | Sbjct 13220911 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCGGCAGCCAGAGTATCCA 13220852 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || |||| || ||||| || |||||||||| Sbjct 13220851 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 13220804 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 13231790 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 13231731 Query 69577 CA 69578 || Sbjct 13231730 CA 13231729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||| ||||| || ||||| ||||||||||| || | |||||||| | || || | | Sbjct 13231439 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGT 13231380 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| || ||||| ||||| || | || |||||||| | || || | ||||| || Sbjct 13231379 TCTTCCTTCCCTGTGTTTTTCTTCAAGTCAAGAAACTCAAAGATGTCTAAGTGCCAAGGC 13231320 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 13231319 TCCAGGTAAATAGC 13231306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686724330641760