Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq121 105 5e-18 seq68 98.7 8e-16 seq35 86.0 5e-12 >seq121 Length=6870801 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 30262 CAAGAAGTTCAAGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 30203 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||||||||| || || || || ||||| |||||| Sbjct 30202 ATACATTCTGAGATGTACAGTCTCCTTATTGACACTTACATTAAAGAT 30155 >seq68 Length=11249547 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | ||||| || || || ||||| || |||| Sbjct 11209961 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAATGGGGAGCTGT 11209902 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 11209901 CTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCA 11209842 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| ||||| || || |||||||||||| Sbjct 11209841 GCTATGCCCTGCTTACCTACATGATTGCACAC 11209810 >seq35 Length=17774785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 13474429 AAAATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTCTTTGAGA 13474488 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| || |||||||| | | |||||| Sbjct 13474489 AACGAGTTTCTGAGTATCAGCGTTTTGCAGTCATG 13474523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397351931611420