Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq109 95.1 1e-14 seq4086 82.4 8e-11 >seq109 Length=8431132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 8258391 GTGAAAATATAGCGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGTGTTCCAAACTGA 8258450 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| | |||||| |||||| ||||||||||||||||| ||| Sbjct 8258451 CCAATGGGTTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTTACA 8258510 Query 152149 ATCGT 152153 || || Sbjct 8258511 ATAGT 8258515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| |||||||||||| ||||||||| ||| || || || || || Sbjct 8258391 GTGAAAATATAGCGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGTGTTCCAAACTGA 8258450 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 8258451 CCAATGGGTTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTTACA 8258510 Query 117425 ATCGT 117429 || || Sbjct 8258511 ATAGT 8258515 >seq4086 Length=8131 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 3198 GTAAAGATGTATCGAGGACTAGCTGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 3139 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| | || || ||||| ||||||||||||||||| | | Sbjct 3138 CCAATGGGTTGCAAGAGGTTCAAATTATTACTACCCACAAAATTCTGAGCCAAATTGATA 3079 Query 152149 ATCGT 152153 || || Sbjct 3078 ATGGT 3074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547069045143200