Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq88 149 7e-31 seq11 134 2e-26 seq34 131 2e-25 seq15 125 8e-24 seq83 96.9 4e-15 seq33 96.9 4e-15 seq31 96.9 4e-15 seq215 89.7 6e-13 seq102 89.7 6e-13 >seq88 Length=9234670 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || || || || || || |||||||| | Sbjct 4564282 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 4564223 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| |||||| Sbjct 4564222 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4564163 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||||||| | || || |||| || || | | ||||| || Sbjct 4564162 CAGAGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTACAAC 4564103 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| ||||| || || ||| | ||||| ||||| Sbjct 4564102 ATCCAAAAGGAGTCCACCCTTCACCTTGTGTTGAGACTTCGTGGTGG 4564056 >seq11 Length=24937227 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 14395391 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 14395332 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||| |||||||| || || || |||||| Sbjct 14395331 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 14395272 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || || |||| || || || | || || || Sbjct 14395271 CAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 14395212 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | || || | ||||| Sbjct 14395211 ATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGCCTCAGGGGTGG 14395165 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 14396259 AATGCAAATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 14396200 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||| |||||||| || || || ||||| Sbjct 14396199 TGACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 14396140 Query 27525 GCAGCGTCTAATTTTTGCTGG 27545 |||||| || || ||||| || Sbjct 14396139 GCAGCGACTCATCTTTGCAGG 14396119 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 11/157 (7%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||||| ||||| || || |||||| | || ||||||||||||||| | || Sbjct 18706499 ATGCAGGTGTTTGTGAAGACCCTGACGGGCAAGGCCATCACTCTTGAGGTTGAGCCCAGT 18706440 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 | | ||| |||| ||||| || || || ||||| || | ||| || |||||| Sbjct 18706439 TACACCAT--CAAAAATGAAGACTGAA------GATAAGGAAGGCA-TCCCCCTGACCAG 18706389 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || | ||||| |||||||| ||||| || ||||||| Sbjct 18706388 CA--GACTAATATTTGCTGGCAAGCAGCTGGAGGATG 18706354 >seq34 Length=19385306 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | |||||||| || ||||||||| | ||| | || Sbjct 7139647 ATGCAGATCTTTGTGAAGACCTTGTTGGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 7139706 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || | ||||| || ||||| | |||||| Sbjct 7139707 GACACCATCGAGAATGTCAAGGCCAAGATCCAATATAAGGAAGGCATTCCATCTGACCAG 7139766 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| | ||||||| | ||||| | ||||| || Sbjct 7139767 CAGAGACTGATATTTGCTGGCAAGCAGGTGGAGGATGGCCAAACCCTGTCGGACTACAAC 7139826 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| | ||||| || | ||||||||||| || Sbjct 7139827 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTTCGTCTTCGCGGGGG 7139873 >seq15 Length=24491037 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 10712991 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 10712932 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || || ||| | || ||||| || |||||| Sbjct 10712931 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGAAAGGCATTCCACCTGACCAG 10712872 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || |||| || || | || | |||| || Sbjct 10712871 CAGAGACTGATATTTGCTGGCAAGCAGCTGGAGGGTGGCCGCATGCTGTCGAACTACAAC 10712812 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| || || ||||| Sbjct 10712811 ATCCAGAAAGAGTCCAC 10712795 >seq83 Length=9922814 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||||||||| || ||||| || ||||||||||| || || || ||||| ||| | ||| Sbjct 4819657 TGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTG 4819716 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||| ||| ||||||| || || |||| |||||||| | | || ||||| Sbjct 4819717 ACACCATCCAGAATGTGAAGGCCAAGATCCAGGCTAAGGAGGGCACCCACCCCCCCCAGC 4819776 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| || || ||||| || ||||| || || |||| Sbjct 4819777 AGCAACTCATCTTTGCGGGCAAGCAGCTGGAAGATG 4819812 >seq33 Length=18013292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 |||||||| ||||| || | |||||||| || ||||||||||| ||| | |||| Sbjct 16639321 ATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACTCT 16639380 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||| | || || || || ||||| | || || | ||||||||| | Sbjct 16639381 ATTGAGAATGTCAAGACCAAGATCCAAGATAAGGAAGTCATCCCATCTGACCAGCAGAGG 16639440 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || ||||| | ||||| || |||||||| | ||||| ||||| || ||| Sbjct 16639441 CTGATATTTGCCAGCAAGCAGCTGGAGGATGACCACACCCTGTTGGACTACAACATCCCG 16639500 Query 27592 AAGGAATCCAC 27602 || || ||||| Sbjct 16639501 AAAGAGTCCAC 16639511 >seq31 Length=19353835 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 |||||| ||||| ||||| ||||| |||| || |||||| |||| || ||||||||||| Sbjct 14184728 TAAAATCCAGGATAAGGAAAGAATTTCTCCTGATCAGCAGAGTCTGATCTTTGCTGGTAA 14184669 Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||| || |||| | ||| | | ||||| | | |||||||| ||||| |||| Sbjct 14184668 GCAACTAGAAGATGGCCATACTTTGTCTGACTACAGCATTCAAAAGGAGTCCACCCTTCG 14184609 Query 27609 TCTAGT 27614 ||| || Sbjct 14184608 TCTTGT 14184603 >seq215 Length=1997539 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || || || || || || |||||||| | Sbjct 1382576 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCGAGGTTGAACCCTCG 1382517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| |||||| Sbjct 1382516 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 1382457 Query 27526 CAGCGTCTAATTTTTGC 27542 ||| | || || ||||| Sbjct 1382456 CAGAGGCTGATCTTTGC 1382440 >seq102 Length=8054149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || || | || || ||||| || || || ||||| ||| | | Sbjct 3738439 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 3738498 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || |||||||||||||| || || || ||||| Sbjct 3738499 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 3738558 Query 27525 GCAG 27528 |||| Sbjct 3738559 GCAG 3738562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570157243142080