Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1 152 7e-32 >seq1 Length=79790405 Score = 152 bits (168), Expect = 7e-32 Identities = 262/372 (70%), Gaps = 10/372 (3%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| ||| |||||||| | ||||| || || || || || ||| | |||||||| Sbjct 41368602 GCCCCTTAGCAAAGAAGAGGTAGGCTTTCCAATTGCGTATTCCATAGTGGTTCACCACAA 41368661 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 |||||| ||| | || | ||||||||||||||||| || ||||| |||||||| | Sbjct 41368662 GATCGAAATGCTGGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCAT 41368721 Query 13790 CCACGTGGACTCCAAGTCCGGCGA-CGAGTTC-ATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||| || ||| || | ||| | ||| | || || ||| || Sbjct 41368722 CCACGTGGACAAAAAAGCCGAGGAGCCCTTTCTAGCCGCG--GTGATGGGCATTGCGTCC 41368779 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| |||||| ||||| || |||| | || || || | ||||||||| Sbjct 41368780 TGCTTTGGTAACGTCTTTGTGGCCAGCCAGCTGGAGAGTGTTGTTTATGCATCCTGGAGT 41368839 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC-GCCTCCCCCGT-CAAG-TGG 13964 || |||||||| ||||||| ||| ||| ||||||| || | | || |||| ||| Sbjct 41368840 CGGGTGCAGGCTGACCTCAACTGTATGAAGGACCTGTACAGGAT---GAGTGCAAGCTGG 41368896 Query 13965 AGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTG 14024 | |||| || ||||||| || || ||||| ||||| |||| |||||||| || || || Sbjct 41368897 AAGTACTTGATCAACCTTTGTGGTATGGATTTCCCTATCAAAACCAACCTAGAAATTGTC 41368956 Query 14025 CGGGCGCTGAAG 14036 || | || ||| Sbjct 41368957 AGGACACTCAAG 41368968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658562295587840