Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq228 114 1e-20 seq68 113 4e-20 seq4 82.4 6e-11 >seq228 Length=1691671 Score = 114 bits (126), Expect = 1e-20 Identities = 183/259 (71%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || | || || ||||| ||||||| |||| || || ||||| | Sbjct 1401687 ATGAGCTCCTTGTGGCAGCTCCTTGAGCTCTGTGCTGAGAACTATATTAATTCTGTCCTT 1401746 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || | ||||||||||| ||||| | ||||| ||||||| ||| Sbjct 1401747 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAGGTCTTCCATCCCATAATCACCAGGTT 1401806 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558 ||| || | |||| || || || |||| | | |||| || || || || || Sbjct 1401807 CTGTTTAC------CTGAGGAGGTGGCAGTCATTCTTTGGAAGTACTTGAATTCGTTCCA 1401860 Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCAT-GTCTGGACACG 110617 | ||| || |||| ||||| |||||||| || || |||||||| |||| | || Sbjct 1401861 GA-----GCA-GAGGCCAGGGCAGGTCTCCGTTCTTGCCAATGCCCATATTCTGCA-ACA 1401913 Query 110618 CGGCCACGATACCGTTCAG 110636 |||| ||||| | |||||| Sbjct 1401914 CGGCGACGATGCAGTTCAG 1401932 >seq68 Length=11249547 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || || ||||||||||| || || || || ||||| || | | Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 11209963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||| ||||||||||| || || || || |||||||| Sbjct 11211883 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 11211942 Query 30283 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || || | | |||| ||| ||| |||||||||| |||| ||| || ||||| | Sbjct 11211943 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCAT 11212001 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| || | || ||||| || || ||||| | |||||||| || Sbjct 11212002 CCCATATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAACC 11212050 >seq4 Length=37932696 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 21118494 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 21118553 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 21118554 ATGGAGAACCAGGTTTTCCGTCCCATAATCACCAGGTTCTGTTTACCT 21118601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406204013208528