Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 seq86 86.0 5e-12 >seq11 Length=24937227 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 14395392 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 14395333 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || || || || ||||| || ||||| || Sbjct 14395332 TGACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 14395273 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || ||||||| | || |||| |||||||| Sbjct 14395272 GCAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 14395213 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || || ||||| ||| | || |||| | || | |||||||| Sbjct 14395212 CATCCAGAAAGAGTCTACCCTGCACCTGGTCCTCCGCCTCAGGGGTGGC 14395164 >seq86 Length=10151807 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 ||| || || ||||||| |||||||||||| | || || || || |||||||| || Sbjct 3693350 GCAAATTTTAATAAAAACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAACCCAGTGA 3693291 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | ||| ||| |||| || || || || ||||| ||||| || || ||||| Sbjct 3693290 CACCATTCAGAATGTCAGGGTCAAGATCCAGGATAAAGAGGGCATCCCCGCCCTCCAACA 3693231 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 || | || | |||||||| ||| ||||||| | || |||| ||||||| ||| Sbjct 3693230 GCAACTCATCTTTGCCGGCAAGCAACTGGAAGATGACTGCACTCTTTCTGATTACAGCAT 3693171 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGC-GTTTGCGGGGTGGC 27215 || | |||| ||| | || |||| | | |||| |||||||| Sbjct 3693170 CCAGGAAGAGTTCACCCTGCACCTGGTCCTCCATTTTGAGGGGTGGC 3693124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434801602663680