Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq68 132 4e-26 >seq68 Length=11249547 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || ||||| || || || ||||||||||| ||||| || | ||| Sbjct 11209811 TGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 11209870 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || || || ||||| |||||||||||||| | || |||||||| Sbjct 11209871 ATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACCACATAGAATTGA 11209930 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || |||||||| || ||||| Sbjct 11209931 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 11209971 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| |||||||| || | ||| Sbjct 11209971 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAAT 11209912 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||| || || || | || ||||| ||||| | || ||||| ||| Sbjct 11209911 GGGGAGCTGTCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 11209852 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || ||||| || |||||||| || || Sbjct 11209851 AACATTGCCAGCTATGCCCTGCTTACCTACATGATTGCACA 11209811 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 11211893 TAGTCTGCTCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 11211952 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||| ||| ||||| ||||| | || ||||| || || Sbjct 11211953 CGTGCAGAGAATCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTC 11212012 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 11212013 ACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGG 11212046 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| |||| || ||||| || | ||||| | Sbjct 11212046 CCACAAATGCTAAAGAACTGTCCTCCAAGGGAGTGAGAATATGGGATGCCAATGGGTCCC 11211987 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| ||| |||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 11211986 GAGATTTTTTGGACAGCCTGGGATTCTCTGCACGACAGGAAGGGGACCTGGGCCCAGTTT 11211927 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 11211926 ATGGTTTCCAGTGGAGACATTTTGGAGCAGACTA 11211893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 11210677 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 11210736 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||||||||| |||| || |||||||| || Sbjct 11210737 ATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAATAATC 11210777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || |||||||| || |||| ||||||||||| | ||||| |||||| | || ||| Sbjct 11210777 GATTATTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACCAAC 11210718 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| ||| | ||||| || |||||||| || Sbjct 11210717 CCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 11210677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448142019132480