Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq50 210 2e-49 seq228 181 9e-41 seq4 165 7e-36 seq115 118 9e-22 seq68 105 6e-18 >seq50 Length=13914209 Score = 210 bits (232), Expect = 2e-49 Identities = 188/236 (80%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| ||| || Sbjct 3551092 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTATAGCAAA 3551033 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 |||| |||||||| |||||||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 3551032 AACCATGGGGTTGTAGTTCAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGA 3550973 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || || ||||||||||||||| ||||||||||||| ||||||| | Sbjct 3550972 CTCTGGAACACAAGCATCACTTTCTGGAACACAACACTGGATGATGAAGGCTGCTACATG 3550913 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| |||| ||||||||||| ||||||| || || || ||||| Sbjct 3550912 TGTCTCTTCAACACGTTTGTTTCTGGGAAGATCTCAGGAACAGCCTGCCTCACCCT 3550857 >seq228 Length=1691671 Score = 181 bits (200), Expect = 9e-41 Identities = 349/510 (68%), Gaps = 6/510 (1%) Strand=Plus/Minus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 |||||||||||||| || || ||| | ||||| ||||||| || || ||||| || Sbjct 1401905 AATATGGGCATTGGCAAGAACGGAGACCTGCCCTGGCCTCTGCTCTGGAACGAATTCAAG 1401846 Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATGGGA 2286 | || |||| |||||| | | ||| | | |||||||| | || ||||||||| Sbjct 1401845 TACTTCCAAAGAATGACTGCCACCTCCTCAGGT---AAACAGAACCTGGTGATTATGGGA 1401789 Query 2287 AGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCT 2345 | ||||| ||||| || | ||| | | || | | ||||| || ||||||| ||| | Sbjct 1401788 TGGAAGACCTGGTTCTCCATTTCTGAGAAGAATC-GACCTTTAAAGGACAGAATTAATAT 1401730 Query 2346 GGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTAT 2405 |||||||| | | | || || |||| |||| || ||||| ||| |||| |||||| | Sbjct 1401729 AGTTCTCAGCACAGAGCTCAAGGAGCTGCCACAAGGAGCTCATTTTCTTGCCAAAAGTCT 1401670 Query 2406 AGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTG 2465 || | || | || |||| | |||||| ||| ||||| ||| | | | |||| Sbjct 1401669 GGACGATGCCTTAAAACTTATTGAACAACCAGAGTTAGCAGACAAAGTGAACATGGTTTG 1401610 Query 2466 GATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGATCTTGCAAACAGATGCT 2525 |||| |||| || || ||||| || |||| ||| | | ||| | || | || Sbjct 1401609 GATAGTTGGAGGCAGTTCTGTTTACAAGGAAGCCATGAATCAGCCATGCCATCA-AGACT 1401551 Query 2526 GTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCT 2585 ||| | |||||||| |||| |||||||| |||| | | | ||||||||||| || | Sbjct 1401550 CTTTGTGACAAGGATCATGCAGGAATTTGAAAGTGACATGTTCCTCCCAGAAATTGATTT 1401491 Query 2586 TACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAA 2645 ||||| |||| ||| | || | ||||| || | |||| || || || ||||| Sbjct 1401490 GGAGAAATATAAACTTCTTCCAGAGTACCCAGGGGTCCTTTCTGAAGTTCAGGAGGAAAA 1401431 Query 2646 TGGAATTAGATACAAATTTGAGATATATGA 2675 || || | || |||||||| | ||||| Sbjct 1401430 AGGTATCAAGTATAAATTTGAAGTCTATGA 1401401 >seq4 Length=37932696 Score = 165 bits (182), Expect = 7e-36 Identities = 349/520 (67%), Gaps = 3/520 (1%) Strand=Plus/Minus Query 2138 CTCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGC 2197 |||| |||| || | ||||| || | ||||||||||| | || | || | |||| Sbjct 3415854 CTCTGAACTACATCGTCGCTGTGTCCCAGAATATGGGCATCTGCAAGGACCGAGACCTGC 3415795 Query 2198 CATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTG 2257 | ||||||| || | || | || || | || |||| |||||| | | ||| | | Sbjct 3415794 CCTGGCCTCTGCTCAGGAACGGATGCAAGTACTTCCAAAGAATGACCACCACCTCCTCAG 3415735 Query 2258 ACTTA---AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTA 2314 | |||||||| | || |||||||| | || || || || || ||||| | Sbjct 3415734 TGGCAGGTAAACAGAACCTGGTGATTATGGGCTGGAAAACCTGCTTCTCCATTCCCGAGA 3415675 Query 2315 AAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 | || ||||||| || ||||||| ||| | |||||||||||| | || || ||||||| Sbjct 3415674 AGAGTGGGCCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAGCTCAAGGAGCCAC 3415615 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 || | ||||| ||| |||| |||||| | ||| | | | || |||| | || Sbjct 3415614 CATAAGCAGCTCATTTTCTTGCCAAAAGTCTGGATGATGGCTTAAAACTTATTGAACAAC 3415555 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||| ||| || | ||||| | | |||||||| |||| || || |||||||| ||| Sbjct 3415554 CAGAGTTAGCAGGTAAAGTGGACATGGTTTGGATAGTTGGAGGCAGTTCTGTCTACAAGG 3415495 Query 2495 AGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 | ||| | | || | | | || ||| | |||||||| |||| |||||| Sbjct 3415494 AAGCCATGAATCAGCCAGGCCATCTCAGACTCTTTGTGACAAGGATCATGCAGGAATTTG 3415435 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || |||| || | ||||||||||||| || | |||| ||||| || | || | || Sbjct 3415434 AAAGTGACACGTTCTTCCCAGAAATTGATTTGGGGAAATGCAAACTTCTCCCAGAGTATC 3415375 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAG 2654 |||| || | |||| || || || ||||| || || || Sbjct 3415374 CAGGGGTCCTTTCTGAAGTCCAGGAGGAAAAAGGCATCAG 3415335 >seq115 Length=8120349 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 2849497 GTGGTGGAGGAACTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 2849556 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 2849557 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 2849616 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 2849617 ATCGCCCTGTGGATGACTGA 2849636 >seq68 Length=11249547 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| |||| |||||||| | ||||||||| |||||||| ||| | Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | | || || |||||||| |||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 11209959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414368274948976