Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 >seq11 Length=24937227 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| || || | ||| | |||| || || || |||||| || || || ||||| | Sbjct 14395163 AGCCACCCCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAG 14395222 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || || | || || ||||| ||||| ||||| || || ||||||||||||| || Sbjct 14395223 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGG 14395282 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| || ||| ||| || |||| | | | || || || | ||||| Sbjct 14395283 GGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCA 14395342 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 14395343 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429433129390892