Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq88 113 3e-20 seq11 86.0 4e-12 >seq88 Length=9234670 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 4564285 AACATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCC 4564226 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| |||| || || || || ||||| | || || || Sbjct 4564225 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 4564166 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| || || | |||||||| | ||||| || || ||| Sbjct 4564165 CAGCAGAGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTAC 4564106 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| |||||||| Sbjct 4564105 AACATCCAAAAGGAGTCCAC 4564086 >seq11 Length=24937227 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || || || ||| Sbjct 14395391 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 14395332 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || || || || || | || || || || Sbjct 14395331 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 14395272 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || |||||||| | |||||| | ||||||||| Sbjct 14395271 CAGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 14395212 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 14395211 ATCCAGAAAGAGTCTAC 14395195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337921096833872