Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq88 154 4e-32 seq11 140 8e-28 seq34 102 2e-16 seq15 100 7e-16 seq21484 98.7 2e-15 >seq88 Length=9234670 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| |||||||| || ||||| || ||||||| ||||| || | ||| || Sbjct 4564061 ACGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGT 4564120 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||| ||| ||||| ||||| || | || ||||| || ||||| || Sbjct 4564121 GCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCC 4564180 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || ||||| |||| ||| || || | Sbjct 4564181 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 4564240 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| || || ||||| | || || | ||| | ||||| || Sbjct 4564241 CGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq11 Length=24937227 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 14395180 AGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 14395239 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| ||||| || |||||||| || || || ||||| || Sbjct 14395240 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 14395299 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||||||| || ||||| || | ||||| ||| Sbjct 14395300 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 14395359 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 14395360 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| ||||| || |||||||| || || || ||||| || |||||||| | Sbjct 14396119 CCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCC 14396178 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || || |||||||||||| || ||||| |||| ||||| |||||||| |||| | Sbjct 14396179 TTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGA 14396238 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | ||| | ||||||||| Sbjct 14396239 GTCTTCACGAAGATTTGCATTTT 14396261 >seq34 Length=19385306 Score = 102 bits (112), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || || | ||||| ||||| |||| ||||| || | || ||| Sbjct 7139867 CGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTT 7139808 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||||| || | |||||| ||||| || || |||| || ||||| | ||||| ||| Sbjct 7139807 TGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCT 7139748 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| | ||||||||| ||| ||| ||||||||||| || || | || | Sbjct 7139747 TCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAACTCAAGA 7139688 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||| ||| || || | || | ||||| || Sbjct 7139687 GTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTT 7139644 >seq15 Length=24491037 Score = 100 bits (110), Expect = 7e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||| ||||| |||| ||||| | | || | | ||| | || |||||||| ||| Sbjct 10712795 GTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCA 10712854 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || |||| || ||||| || ||||| |||| ||| ||||||||||| ||| Sbjct 10712855 GCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTG 10712914 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| ||||||||||| || || || || | ||||| |||||||| |||| Sbjct 10712915 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCA 10712969 >seq21484 Length=16264 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || || || || | || || ||||| |||||||| || |||||| | ||||| Sbjct 5463 CAAATCTATAATGTAGTTGTAACAGCTCATGCATTTGTTATAATCTTCTTTATGGTTATA 5522 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || || || ||||| ||| | || || |||| ||||| || |||||| Sbjct 5523 CCAATAATAATTGGGGGATTTGGAAACTGACTTGTACCACTAATAATTGGAGCCCCTGAT 5582 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||||| || || | | || || |||||||| ||| | ||||| || || || |||| Sbjct 5583 ATGGCATTCCCTCGAATAAATAACATAAGTTTCTGACTTCTACCCCCCTCATTCCTTCT 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192202939389896