Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq68 129 5e-25 seq228 111 1e-19 seq4 82.4 6e-11 >seq68 Length=11249547 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||| ||||| |||||| Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || |||||||||||||| || ||||| || ||||| || | | Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || || ||||| | ||||||||| ||||| || ||||| || Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 11209962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAA 30075 ||||| ||||||||||| || || || || |||||||| || || | | |||| ||| Sbjct 11211905 AAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGCAGAGAA 11211963 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| |||||||||| |||| ||| || ||||| ||||| || | || ||||| Sbjct 11211964 TCCCAGGCTGTCCAAAAAATCTCGGGACCCATTGGCATCCCATATTCTCACTCCCTTGGA 11212023 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 ||| || ||||| | |||||||| || Sbjct 11212024 GGACAGTTCTTTAGCATTTGTGGAACC 11212050 >seq228 Length=1691671 Score = 111 bits (122), Expect = 1e-19 Identities = 181/259 (70%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || | || || ||||| ||||||| |||| || | ||||| | Sbjct 1401687 ATGAGCTCCTTGTGGCAGCTCCTTGAGCTCTGTGCTGAGAACTATATTAATTCTGTCCTT 1401746 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || | ||||||||||| ||||| | ||||| ||||||| ||| Sbjct 1401747 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAGGTCTTCCATCCCATAATCACCAGGTT 1401806 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| || || || || |||| | | |||| || || || || || Sbjct 1401807 CTGTTTACCT------GAGGAGGTGGCAGTCATTCTTTGGAAGTACTTGAATTCGTTCCA 1401860 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCAT-GTCTGGACACG 114500 || | || |||| ||||| |||||||| || || |||||||| |||| | || Sbjct 1401861 GAG------CAGAGGCCAGGGCAGGTCTCCGTTCTTGCCAATGCCCATATTCTGCA-ACA 1401913 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | |||||| Sbjct 1401914 CGGCGACGATGCAGTTCAG 1401932 >seq4 Length=37932696 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 21118494 TTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 21118553 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| |||||| |||||| Sbjct 21118554 ATGGAGAACCAGGTTTTCCGTCCCATAATCACCAGGTTCTGTTTACCT 21118601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406056851750824