Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq270 131 1e-25 seq35 113 4e-20 seq121 91.5 1e-13 >seq270 Length=930488 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| ||||| || ||| || ||||||| | Sbjct 655864 GTGAAAACAGACATTCAGATAGCTGTTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGC 655805 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| |||||||| || ||||| || || ||||| || ||||| ||||| ||| ||| Sbjct 655804 TCTGGCTTGGCAGTAAAGCACTTCATAGATGTGGGAGCCGGTGTCATAGACGAAGATTAT 655745 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| ||||| ||||| ||||||| |||||| ||| | | | | ||||||| Sbjct 655744 AGAGGAAATGTTGGTGTTGTGCTGTTTAACTTTGGA-AAAGAGAAGTTTGAAGTAAAAAA 655686 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || ||| | | || || || ||||| ||| Sbjct 655685 AGGTGATCGAATTGCACAGCTCATTTGTGAA 655655 >seq35 Length=17774785 Score = 113 bits (124), Expect = 4e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||| ||||| || || ||||| || || || | ||| ||||| | |||||||| || Sbjct 13464920 TCGTCCCTGCTGATGAGCTCGTTTGAGAAAGTGAGTCCTGGCATGAGGCCTCTCTTCTTC 13464861 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| |||||||||||||| ||||| || ||||| | |||||||||||| || || ||| Sbjct 13464860 AGCCAGAATATAGCGGCAAACGACCCCGAGAAGAAGACGCCTTCTACGGCAGCGAAGGCT 13464801 Query 4692 AC 4693 || Sbjct 13464800 AC 13464799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 13474507 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 13474448 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 13474447 ATAAAATCAAAGGGATT 13474431 >seq121 Length=6870801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||| ||||||||||| ||||| || ||| Sbjct 30156 TCTTTAATGTAAGTGTCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCA 30215 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | || ||||| ||||||||||| | | ||||| Sbjct 30216 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATC 30270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426937782934172