Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq68 113 3e-20 >seq68 Length=11249547 Score = 113 bits (124), Expect = 3e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||| ||||| ||||| Sbjct 11209799 AGACCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 11209858 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||| || || ||||||||||| || || || || ||||| |||| Sbjct 11209859 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTTACC 11209918 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 11209919 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 11209963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369410449620404