Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq270 145 1e-29 seq44 114 2e-20 seq35 87.8 2e-12 >seq270 Length=930488 Score = 145 bits (160), Expect = 1e-29 Identities = 252/360 (70%), Gaps = 15/360 (4%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| || || ||| | | | |||||||| |||| || | | ||||| | Sbjct 655574 TCCAGTGGAGCCGAAGCCTCCCGAGCCCCTTTCAGTGTCATCCAGTGTCTTAACTTCTTC 655633 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | || |||||| | || |||| | | || || || || |||| |||||| | |||| Sbjct 655634 TAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTTTAC 655693 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||||||| || | ||| | || |||| | |||||||||||||| Sbjct 655694 TTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCTTC 655753 Query 46056 ATCTATTACTCCCCCTCCCACATCGAT-ACCT--TTTAGAGACAGTCCAGATCTAGGAGC 46112 ||||| || || |||||||||| || | | |||| | || ||||| | ||||| Sbjct 655754 GTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAGCGTGGAGC 655813 Query 46113 TATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 || |||||||||| ||||| || | || ||| |||| |||||||| | |||| Sbjct 655814 TACTCTTCCATAACACCCAGAA----GGAACAGCTATCTGAATGTCTGTTTTCA-CAAT- 655867 Query 46169 TCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCTGC 46226 |||||||| ||| || || ||||| || || |||||||| | || || || || || Sbjct 655868 GGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 655927 >seq44 Length=14409287 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 13226667 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 13226608 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || |||||||| || | ||| | ||||||| Sbjct 13226607 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 13226548 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 13226547 ATATGCTGTGGTCTTTCAGCC 13226527 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 13231790 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 13231731 Query 77985 CAGTC 77989 ||||| Sbjct 13231730 CAGTC 13231726 >seq35 Length=17774785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 ||||| ||| || |||||||| || ||||| ||||| ||||| ||||| || |||||| Sbjct 13474507 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 13474448 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAA 47943 ||||||||||| ||||| |||||| | ||| Sbjct 13474447 ATAAAATCAAAGGGATTTTCTGCATGAAAAA 13474417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694482246693760