Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq270 118 2e-21 seq44 118 2e-21 >seq270 Length=930488 Score = 118 bits (130), Expect = 2e-21 Identities = 215/308 (70%), Gaps = 15/308 (5%) Strand=Plus/Plus Query 44415 ACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCT 44474 ||||| |||| || |||||| | || |||| | | || || || || |||| ||||||| Sbjct 655626 ACTTCTTCTAAGTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCT 655685 Query 44475 GTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTA 44534 | |||| || ||| | ||||||||| || | || | || |||| || || ||| Sbjct 655686 TTTTTTACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTA 655745 Query 44535 TAATCTTCATCTATTACTCCACCTCCCACATCAAT-ACCT--TTTAGAGAAAGACCCGAT 44591 |||||||| ||||| || || |||||||||| || | | |||| | | || || Sbjct 655746 TAATCTTCGTCTATGACACCGGCTCCCACATCTATGAAGTGCTTTACTGCCAAGCCAGAG 655805 Query 44592 CTAGGCGCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTT 44647 | || |||| |||||||||| ||||| || | || || |||| |||||||| Sbjct 655806 CGTGGAGCTACTCTTCCATAACACCCAGAA----GGAACAGCTATCTGAATGTCTGTTTT 655861 Query 44648 AATCAACCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTATAAATCATAT 44705 | ||| | |||||||| ||| || || |||||||| || |||||||| | || || Sbjct 655862 CA-CAA-TGGCTTTCTCCATAGGTGGTATTGTATAATCATAGGCACTGTACAGGTCGTAG 655919 Query 44706 CCTGCCGC 44713 || || || Sbjct 655920 CCCGCAGC 655927 >seq44 Length=14409287 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| ||||| |||||||| || |||||||| || ||||| | || Sbjct 13238026 TGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATGGAC 13237967 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 13237966 TCGTTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 13237907 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 13237906 TTTCTTACACCAT 13237894 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 13226667 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 13226608 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || |||||||| |||| || | ||||||| Sbjct 13226607 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 13226548 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 13226547 ATATGCTGTGGTCTTTC 13226531 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 13220969 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 13220910 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || | |||||| | | Sbjct 13220909 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCGGCAGCCAGAGTATCCAGT 13220850 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || |||| || ||||| || |||||||||| Sbjct 13220849 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCATGG 13220804 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 |||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| |||||| Sbjct 13231799 TATAACTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACAC 13231740 Query 76571 ATCAATGACCACTC 76584 ||||||||||| || Sbjct 13231739 ATCAATGACCAGTC 13231726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712742941466880