Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq68 84.2 8e-12 >seq68 Length=11249547 Score = 84.2 bits (92), Expect = 8e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || |||| |||||| | || | ||||||||||| | | || |||| || Sbjct 11209959 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTAAATGGGGAGCTGTCT 11209900 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | || ||| | ||||||| || || |||||||||||| Sbjct 11209899 TGCCAACTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 11209840 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 11209839 TATGCCCTGCTTACCTACATGATTGC 11209814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190047502233240