Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq88 132 1e-25 seq11 123 6e-23 seq34 87.8 4e-12 seq15 87.8 4e-12 >seq88 Length=9234670 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||| ||||| || ||||| |||||||||||||| || | || || | Sbjct 4564065 AGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGG 4564124 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || | || || || ||||| |||||||||||||| | | ||||||||| Sbjct 4564125 CCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCC 4564184 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| |||| || || || || || || Sbjct 4564185 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 4564244 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||| || ||||||||||| | |||||| || Sbjct 4564245 ATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq11 Length=24937227 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || ||||||||||| |||||||||||||| | | ||| Sbjct 14395170 CCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 14395229 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| || | ||||||||| | | ||| || Sbjct 14395230 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCC 14395289 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || ||||| | || | | |||| ||| ||| || || Sbjct 14395290 CTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTC---ACTGGGCTCCACCTC 14395346 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 14395347 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 >seq34 Length=19385306 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | || |||||||| ||||||||||| || | | ||| ||||| Sbjct 7139858 AGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTTTGGCCATCC 7139799 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || || || ||||||||||| | | || |||||||| | | Sbjct 7139798 TCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGAATGCCTTCCTTATAT 7139739 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| | |||||||| || Sbjct 7139738 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGAACTCAAGAGTGATG 7139682 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||| | |||||||| |||| |||||| || Sbjct 7139681 GTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTT 7139644 >seq15 Length=24491037 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| ||||||||||| | | | | | ||| | || || || || Sbjct 10712795 GTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCA 10712854 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || ||||||||||| | | || |||| ||| ||||| || || ||| Sbjct 10712855 GCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTG 10712914 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | |||| ||| ||| || |||||||| || || ||||| || || Sbjct 10712915 ACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGG 10712971 Query 152085 GTCTTCACGAAGACCTGCATTTT 152107 |||||||| |||| |||||| || Sbjct 10712972 GTCTTCACAAAGATCTGCATGTT 10712994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153503194959764