Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq88 159 7e-34 seq15 150 4e-31 seq11 143 6e-29 seq34 140 7e-28 seq215 109 1e-18 seq33 105 1e-17 seq12 100 6e-16 seq236 98.7 2e-15 seq309 89.7 1e-12 seq158 89.7 1e-12 seq102 89.7 1e-12 seq28 89.7 1e-12 seq29 87.8 4e-12 seq178 86.0 1e-11 seq150 86.0 1e-11 >seq88 Length=9234670 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || || || | ||| || ||||||||||||||||||| Sbjct 4564055 ACCACCACGAAGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 4564114 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||| || || | || || |||||||||| | || |||||| || Sbjct 4564115 CAACGTGCGGCCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 4564174 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| || ||||| | || ||||||||||| | ||| || Sbjct 4564175 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 4564234 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| || || ||||| | ||||| ||||| |||||||| || Sbjct 4564235 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq15 Length=24491037 Score = 150 bits (166), Expect = 4e-31 Identities = 175/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 282869 TGAA-CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGT 282927 |||| || ||||| ||| |||| ||||| | ||| ||| ||||| ||||||||||||| Sbjct 10712760 TGAAGCCCCCACGAAGGTGAAGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGT 10712819 Query 282928 CAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCAC 282987 | ||| |||||||| |||| || || || || ||||| |||| | || |||||| Sbjct 10712820 TCGACAGCATGCGGCCACCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAG 10712879 Query 282988 CCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTT 283047 ||||| || | ||| ||||||||||| || || || | ||||| ||||| | | Sbjct 10712880 GTGGAATGCCTTTCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCT 10712939 Query 283048 CGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||| || |||||||| ||||| || |||| ||||| || || |||||||| || Sbjct 10712940 CGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 10712994 >seq11 Length=24937227 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||||| || ||||| || | || ||||| ||||||||||| |||| | Sbjct 14395165 CCACCCCTGAGGCGGAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAA 14395224 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | || || ||||| || Sbjct 14395225 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 14395284 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||| || || ||| | ||||| ||||| | || || Sbjct 14395285 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACC 14395344 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 14395345 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 14395391 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 8081693 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 8081635 >seq34 Length=19385306 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| |||||||| || ||| ||||| |||||||||||||| | Sbjct 7139873 CCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 7139814 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||||| | || || || ||||| |||| | || |||||| ||| Sbjct 7139813 AGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGGA 7139754 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| | ||||||||| || || || | ||||| ||||| | |||| Sbjct 7139753 ATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAAC 7139694 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| ||| ||| ||||| || || |||||||| || Sbjct 7139693 TCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTT 7139644 >seq215 Length=1997539 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 |||||||||| | || |||||| ||||| || ||||| || |||||||| || ||| Sbjct 1382440 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1382499 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | || ||||||||||| | ||| || ||||| ||||| || || ||||| | ||| Sbjct 1382500 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTC 1382559 Query 283083 TTAACGAATATCTGCATTTT 283102 || ||||| |||||||| || Sbjct 1382560 TTCACGAAAATCTGCATGTT 1382579 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||| ||||||||||| || || || | ||||| ||||| | ||||| || Sbjct 604604 ACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 604545 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 |||||||| ||||| |||||||| ||||| || || |||||||| || Sbjct 604544 AAGAGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAGATCTGCATGTT 604497 >seq33 Length=18013292 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| ||| ||| || | || || ||| ||||| ||||||||||||| Sbjct 16639541 CCCCCACGAAGGTGAAACACGATGTGCAAGGTGGACTCTTTCGGGATGTTGTAGTCCAAC 16639482 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| || ||||||| || || || | |||||| |||| | || |||||| || Sbjct 16639481 AGGGTGTGGTCATCCTCCAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTCAGATGGG 16639422 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || | ||||| ||||||||||| | || || | || |||| ||| | ||||| Sbjct 16639421 ATGACTTCCTTATCTTGGATCTTGGTCTTGACATTCTCAATAGAGTCACTGGGCTCGACC 16639362 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 || |||||||| ||||| ||| ||| ||||| || || |||| Sbjct 16639361 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCT 16639319 >seq12 Length=25144588 Score = 100 bits (110), Expect = 6e-16 Identities = 69/77 (90%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 4603788 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA- 4603730 Query 168813 TCGTCGCGATAGTGTAT 168829 || | | |||||||| Sbjct 4603729 -CGGGGAGGTAGTGTAT 4603714 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 6913007 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 6912949 >seq236 Length=1459171 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1113374 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 1113316 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1090460 TTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1090518 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1118793 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1118735 >seq309 Length=382471 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 379388 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 379330 >seq158 Length=4249057 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 37773 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 37831 >seq102 Length=8054149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3721207 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3721265 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3723674 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3723732 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || |||||| || || ||||||||||| ||||||||||| || || | || || ||| Sbjct 3738561 TGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTG 3738502 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 || | ||||| || || ||||| |||||||| || || || || ||||| |||||| Sbjct 3738501 TCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGC 3738442 Query 283098 ATTTTC 283103 ||| || Sbjct 3738441 ATTGTC 3738436 >seq28 Length=19452151 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 19419272 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 19419214 >seq29 Length=19544038 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||| |||||||| ||| | |||||||| || || || | || |||||| Sbjct 9852190 TCCTTTTGGATGCTGTAGTCA--AAG--TACGGCCATCTTCCAGCTGCTGACCAGCAAAG 9852245 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | || || ||| ||||| || ||||| || |||||||| || ||||| | Sbjct 9852246 ATCAGCCTCTGCTGCTCAGGAGGAATCCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 9852305 Query 283029 TCGATAGTGTCCGA 283042 || ||||||||||| Sbjct 9852306 TCTATAGTGTCCGA 9852319 >seq178 Length=3274853 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 ||||||||||| | |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1743658 TTAGTATAGTGATGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGAT 1743599 >seq150 Length=4742123 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| ||| Sbjct 223740 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCTGAT 223681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046451070642536