Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq88 152 4e-32 seq11 127 1e-24 seq215 87.8 1e-12 seq29 84.2 2e-11 seq15 84.2 2e-11 >seq88 Length=9234670 Score = 152 bits (168), Expect = 4e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 ||||||||||| |||||||| ||| |||||||||||||||||| || | | ||| Sbjct 4564065 AGTCTCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGG 4564124 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||| ||| || |||||||||| | |||||| || | ||| | |||||| Sbjct 4564125 CCATCTTCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCC 4564184 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| ||| | || |||| ||||| | || ||| ||||| | ||| Sbjct 4564185 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 4564244 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || ||||| |||||||||||||| || |||||| || Sbjct 4564245 ATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTTG 4564286 >seq11 Length=24937227 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || ||| || |||||||||||||| | || ||| | || ||| Sbjct 14395183 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 14395242 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 14395243 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 14395302 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | |||||||| || |||||||||| || || ||||| Sbjct 14395303 ATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 14395362 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||||||||| |||||| Sbjct 14395363 CCGGTCAGGGTCTTCACGAAGATCTGCATG 14395392 >seq215 Length=1997539 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTC 44260 |||||||||| | |||||| || | ||| | |||||||| ||| ||||| ||| Sbjct 1382440 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1382499 Query 44261 AATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 | || |||| ||||| | || ||| ||||| | || || || || ||||| |||||| Sbjct 1382500 ACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGATGGTTTTCCCCGTAAGGGTC 1382559 Query 44321 TTCACGAAGATTTGCATGATG 44341 |||||||| || |||||| || Sbjct 1382560 TTCACGAAAATCTGCATGTTG 1382580 >seq29 Length=19544038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 44121 GTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT 44180 |||||||||| ||| |||| ||| ||||||||||||| |||| || ||| || Sbjct 9852164 GTCTCAACACAAGGGGAAGGGTGGACTCCTTTTGGATGCTGTAGTC--AAAGT--ACGGC 9852219 Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 | || |||||||||| || |||||||||| | |||||| || | ||| | ||||||| Sbjct 9852220 CATCTTCCAGCTGCTGACCAGCAAAGATCAGCCTCTGCTGCTCAGGAGGAATCCCTTCCT 9852279 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTC 44277 | ||| ||||| ||| | || |||| ||||| Sbjct 9852280 TATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTC 9852316 >seq15 Length=24491037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||| | ||| ||| || ||||||||||| | | || ||| | | || Sbjct 10712782 CACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGACAGCATGCGGCCACCCTC 10712841 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || ||||| |||| | |||||| || | || | |||| ||| || Sbjct 10712842 CAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGGAATGCCTTTCTTATCTTG 10712901 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| || || ||||| | || || ||||| Sbjct 10712902 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 10712961 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || ||||||||||| ||||| |||||| || Sbjct 10712962 GCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 10712995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359896141463628