Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq40 149 9e-31 seq123 116 5e-21 >seq40 Length=17264671 Score = 149 bits (164), Expect = 9e-31 Identities = 217/307 (71%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 |||| | || | ||| | | | || || || ||||| ||||| |||||| |||||||| Sbjct 16703599 ATCGTGCACACTGAAGGAGACGAAAGGGCAGCCCTTAACGTTATTACAGATGAGAGACTG 16703540 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 ||| || || | |||| |||| || ||||| ||||| || || ||||| |||||||| Sbjct 16703539 AATTGTGGCAGTGTTGATGATCTTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCA 16703480 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 |||| || || |||||| || |||| || ||||| | |||||| || || || | Sbjct 16703479 GTACTGAGGAGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAG 16703420 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | ||| |||| || ||||| || | ||||| ||||||||||||| | | | Sbjct 16703419 TTCTACCATGGTCTCCCCAAAGATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCAGG 16703360 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 |||||||||| || || | ||| | ||| ||||| | | || || || || || | Sbjct 16703359 ATACAGCTCCATGGCATCAATGTCACTGTAGAGGGCTTTCAACTCTGCGGCCATTTCTGT 16703300 Query 8578 TTCTCCT 8584 |||||| Sbjct 16703299 CTCTCCT 16703293 Score = 116 bits (128), Expect = 5e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| |||||| | || ||||| | ||| ||| | || Sbjct 16700679 TCTTACCCCATGGCCCAGTCCTCGGGTGAAGCCAGGTCCTCGTTTCTGATCTGTCTTGAA 16700620 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || || || || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 16700619 AAACTGATGAGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTCGTGCCTTGGGGATC 16700560 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 || |||| | |||| |||||| |||||||| ||| | | || ||| || |||| Sbjct 16700559 AGGGATGAACTTTCTCCTGAGAAGAACTTTTTCCAGAACTTCTTTCGAATCAGGAAGCT 16700501 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | |||||||| || || | || || ||||| || | || | Sbjct 16699962 TCACCTTTCACACCCAAGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGACTCTGGTA 16699903 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| |||||||||||||||||| || ||| | |||| | ||||| | Sbjct 16699902 TAGTAGGAGAGGTTGGAGAAAGCTTCCCAGTTTTTGTAACCATAGTGTACATTGTAAGTT 16699843 Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053 || || ||||||||||||| ||||| Sbjct 16699842 GGTGGACTGTCAATCAAATGTGATCT 16699817 >seq123 Length=6821335 Score = 116 bits (128), Expect = 5e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| || | || || || ||| || Sbjct 5357463 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATATTCTGGAGAACAAATGGGATT 5357522 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || ||||| || | ||| | || ||||| || ||||| Sbjct 5357523 CCCAAGGAGACCCTTGAGGGAAAAGGGAGCTCCAATCTCTAACATACTCTCCCCAAAGAT 5357582 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| || | || | ||| | ||| | ||| |||| ||| Sbjct 5357583 GGAGTTGGGCTGGCACTTTTCCAGCAGCAGCCCTGGGTAGAACTCTAAAGCGTCGATGTC 5357642 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||| || || || || || || ||||| || || |||| Sbjct 5357643 ACTGTATAGCTCCTCCAGCTCAGCGGCCATCTCTTTCTCCCCTG 5357686 Score = 87.8 bits (96), Expect = 3e-12 Identities = 175/256 (68%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||| |||||| |||||||||||||| || ||||| ||| ||| || || || Sbjct 5371783 CCTATAAGGATGAGACGAGTGGTCTGGAAGAGCTGCTCATCATCCCAGGTGGGGTGCTCC 5371842 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | ||||| | || ||||| | |||||| |||| | |||||| |||| | | ||| Sbjct 5371843 TCCTTCAGCAAGTCACACACGCGGTTGTGCTCCCGCACCCAGATCGTGGAGATGACCATC 5371902 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC--- 9411 | ||| || | || ||||| | || ||||| ||||||| || || |||||| Sbjct 5371903 AACCCCGGGAGCAAACCAAACACTTCCTGACCCACAGCCATCTGC---TTCTCGGGCGGG 5371959 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACG--TCTTTGACCGAGGGGGGATACATTT 9469 || | || || ||| ||| ||| ||||| | || || || || ||||||| | Sbjct 5371960 ACACCCGGTGGGTAGCGCATCAACAC--GGACGCCTGTTCCACAGACGGCGGATACACCT 5372017 Query 9470 CACCGTCAATCATCTG 9485 | ||||| | || ||| Sbjct 5372018 CTCCGTCCAGCACCTG 5372033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716684282735360