Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 158 3e-33 seq88 145 2e-29 seq215 102 2e-16 seq102 91.5 4e-13 seq15 91.5 4e-13 >seq11 Length=24937227 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 14395388 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 14395331 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| |||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 14395330 ACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 14395271 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 14395270 AGCGACTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 14395211 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 14395210 TCCAGAAAGAGTCTACCCTGCACCTGGT 14395183 Score = 122 bits (134), Expect = 2e-22 Identities = 121/154 (79%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| |||| |||||||| ||||| || || || || |||||||| ||| Sbjct 14396267 AAGGTCAAAATGC---AAATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTAGAG 14396211 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 ||||| || ||| |||||||||| |||||||| ||||| ||||| || || || | Sbjct 14396210 GTGGA--GCCCAGTGACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCA 14396153 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||| || |||||||| ||||| ||||| || || Sbjct 14396152 TCCCCCCCGACCAGCAGCGACTCATCTTTGCAGG 14396119 >seq88 Length=9234670 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| ||||| |||||||| ||| ||| ||| Sbjct 4564279 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGAC 4564220 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| |||||||| Sbjct 4564219 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAG 4564160 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || |||| |||||||| | || | | || || ||| || Sbjct 4564159 AGGCTGATCTTTGCTGGTAAGAAGCTGGAAGATGGCCGCACGTTGTCTGACTACAACATC 4564100 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || || ||||| |||||||| Sbjct 4564099 CAAAAGGAGTCCACCCTTCACCTTGTGTTGAGACT 4564065 >seq215 Length=1997539 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| ||||| |||||||| ||| ||| ||| Sbjct 1382573 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCGAGGTTGAACCCTCGGAC 1382514 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| |||||||| Sbjct 1382513 ACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAG 1382454 Query 178044 CGACTTATCTTCGC 178057 | || ||||| || Sbjct 1382453 AGGCTGATCTTTGC 1382440 >seq102 Length=8054149 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/121 (78%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||||||| | || || || || |||||||| ||||| | ||| || | Sbjct 3738443 CAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCG--AGCCCAGTG 3738500 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||| |||||||| || || ||||| || ||||||| Sbjct 3738501 ACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3738560 Query 178042 A 178042 | Sbjct 3738561 A 3738561 >seq15 Length=24491037 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || ||||| || ||||| || || ||| Sbjct 10712988 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 10712931 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || || || |||| || || || ||||||| Sbjct 10712930 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGAAAGGCATTCCACCTGACCAGC 10712871 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| || || || || || ||||| || | ||| | | || | | || ||| Sbjct 10712870 AGAGACTGATATTTGCTGGCAAGCAGCTGGAGGGTGGCCGCATGCTGTCGAACTACAACA 10712811 Query 178102 TCCAAAAAGAATCAAC 178117 |||| ||||| || || Sbjct 10712810 TCCAGAAAGAGTCCAC 10712795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203399856435896