Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq34 102 8e-17 seq88 95.1 1e-14 seq44 84.2 2e-11 seq15 84.2 2e-11 >seq11 Length=24937227 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| || || || || ||||| | || || Sbjct 14395183 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 14395242 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || ||||| ||||| | ||| | || |||||| ||| || Sbjct 14395243 AGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC-TG 14395301 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | ||| | | ||||| || | ||||||||||| || || || || Sbjct 14395302 GATCTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 14395361 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 14395362 GCCGGTCAGGGTCTTCACGAAGATCTGCATG 14395392 >seq34 Length=19385306 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||||||||| ||| ||| ||||| ||||| ||||| || Sbjct 7139874 GCCCCCGCGAAGACGAAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCCGA 7139815 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || | ||||||||| || |||||||| | ||| ||||| | || Sbjct 7139814 CAGGGTTTGGCCATCCTCCACCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGATGG 7139755 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||| | ||| || ||| | | | ||||| || | ||| | Sbjct 7139754 AATGCCTTCCTTATATTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAA 7139695 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| || ||||| || || ||||||||||| Sbjct 7139694 CTCAAGAGTGATGGTCTTGCCCAACAAGGTCTTCACAAAGATCTGCATGTT 7139644 >seq88 Length=9234670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| || || || ||| |||||| || ||||| ||||| || | ||||| | || Sbjct 4564071 AACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAACGTGCGGCCATCT 4564130 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||| ||| || || || ||||| | ||| ||||| | |||| | ||||| ||| Sbjct 4564131 TCCAGCTTCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATTCCTTCCTTATCC 4564190 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | |||||| | || ||||| | ||| || ||| Sbjct 4564191 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 4564250 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| || ||||| ||||||||||||||||| Sbjct 4564251 TTCCCCGTAAGGGTCTTCACGAAAATCTGCATGTT 4564285 >seq44 Length=14409287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || || || | |||||| |||| | | ||| ||||| | ||| ||||| || |||||| Sbjct 3701600 CGAAGGCGAAGCACCAGGTGCAAGGAGGACTCTTTCTGGACGTTGTAGTCTGACAGGGTG 3701659 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 || | || || ||||||||||| || |||||||| | ||| | ||| | |||| || Sbjct 3701660 CGGGCATCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTTGTCAGGTGGAATGCCT 3701719 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821 ||||| | ||| || ||| | | | ||||| || | || ||||| | Sbjct 3701720 TCCTTATTTTGGATCTTGGCCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAGA 3701779 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || | || ||| |||| ||||| || || ||||||||||| Sbjct 3701780 TTGATGGCCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 3701823 >seq15 Length=24491037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| | | ||| ||| ||||| ||||| |||| || Sbjct 10712764 GCCCCCACGAAGGTGAAGCACCAGGTATAAGGTGGACTCTTTCTGGATGTTGTAGTTCGA 10712823 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||| | | || ||||||||||| || |||||||| | ||| ||||| | || Sbjct 10712824 CAGCATGCGGCCACCCTCCAGCTGCTTGCCAGCAAATATCAGTCTCTGCTGGTCAGGTGG 10712883 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || | ||| || ||| || ||| | | | ||||| || | ||| || Sbjct 10712884 AATGCCTTTCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 10712943 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || || ||||| ||||| || || ||||||||||| Sbjct 10712944 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTT 10712994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462179848260800