Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq20938 89.7 1e-12 seq557 89.7 1e-12 >seq20938 Length=81677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 42864 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 42805 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42804 CCCACGTTGGGC 42793 >seq557 Length=245217 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 151610 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 151551 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 151550 CCCACGTTGGGC 151539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054703987119260