Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq116398 91.5 2e-13 >seq116398 Length=207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 |||| || ||| |||| | ||| || || | ||||||||||| || ||||| || Sbjct 156 ACTCTTTGCTCCAACGGCTTGTGTACCAGGTGCCTGAACATCAGACAGGCAAAATCACAG 97 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATC--TTTC 17036 ||||| ||||| |||||||| ||||| || || ||||| || | || |||||| |||| Sbjct 96 TGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTTTC 37 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 |||||||| | ||| ||||| | || || || ||| Sbjct 36 --CGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516056349597360