Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6322 87.8 2e-12 seq1093 87.8 2e-12 >seq6322 Length=173588 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 16240 AAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGC 16299 ||| ||||||||||| || | || ||||| ||| ||||||| | ||||||||| | Sbjct 119794 AAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGA 119735 Query 16300 AGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGC 16359 ||||| || || || ||||| || || || |||| ||||| | | | |||||| | Sbjct 119734 TGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCC 119675 Query 16360 GTACGTAGCATCTTTAT-TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATAC 16418 || ||||| ||||| | | | |||||| | | |||| || || || | ||| | || Sbjct 119674 ATAGGTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACAC 119615 Query 16419 AATCCATCGTTTCTATGGCCTTAAA 16443 || ||| || || || || || || Sbjct 119614 AAGGCATTGTCTCAATAGCATTGAA 119590 >seq1093 Length=1386444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| ||||| ||||||||||| || | || ||||| ||| |||||||| Sbjct 281503 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 281562 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| | ||||| || || || ||||| || || || | || ||||| || Sbjct 281563 AGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGGCC 281622 Query 16346 ATTAATCGTTC 16356 | | |||||| Sbjct 281623 ACAACTCGTTC 281633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509942792278640