Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq223 138 8e-28 seq1729 122 6e-23 seq3811 104 2e-17 >seq223 Length=4299573 Score = 138 bits (152), Expect = 8e-28 Identities = 285/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 3988 ACTTCAAATTTGTA--CTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTTGGAT 4045 ||||||| ||| || || ||| | | || || || || | |||||| |||| || Sbjct 1665657 ACTTCAAGTTTATATACTGAATGCCCCTTTCCTCCTGGACCTCAGAAAGGACACCTGTGC 1665598 Query 4046 ATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAA 4105 ||||| | | |||| ||| | | | ||||| |||||| ||| || ||| |||| Sbjct 1665597 ATTCTGGGAGATGTTTATATCTTCCCAAATCAATTTCTGGGAAAGCCATGCCACTTTCAG 1665538 Query 4106 AGTCTTGCATGATCCTAGTCA------CAAACAGTTTAAGATCGCATGGATAACTCATAG 4159 | || ||||||||||| ||| |||||||||| || | | | | |||| | Sbjct 1665537 ATTCCTGCATGATCCTTGTCGTAATCGCAAACAGTTTGAGGAGCCCCAGCTGATTCATGG 1665478 Query 4160 CTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATT 4219 || | | | || ||||| |||| | |||| ||| ||||||||||||||| ||||| Sbjct 1665477 CTCCCTCGTGAACGGAACTGCCTCGGGCTGTCCAAACCTTGTCTACTTTATTTGATAATT 1665418 Query 4220 CTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTAT 4279 | || ||||| ||||||||||| ||| ||| ||| || | | |||||||| || | Sbjct 1665417 CGGGTTGTTCAGTAAGTTTTAAGGCACTGTCTGGACTTTTGACAAGAAAATGAGTTCCTT 1665358 Query 4280 GTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAGGCCGG 4338 |||| ||||||| || |||||||| | ||||||| |||| ||||| | Sbjct 1665357 GTGGTGTTCCCTTTAGGTCTCCACTGAGAACTTTGTGAATTCTGTTCTTTACCAGGCC-G 1665299 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || | |||||||| |||| || || || |||| | | || | ||||||||| || Sbjct 1665298 TTTTCCTCAGGAACGGAGATCCCGGTTTTCCCACCCGT--TAACCAGGTTCTGTTTACCT 1665241 >seq1729 Length=1058436 Score = 122 bits (134), Expect = 6e-23 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || || ||||| ||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct 892970 TTGTAAACGGAACTGCCTCCAACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 892911 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 ||||| ||||||||| |||||||| | ||| || || | ||||||||||| Sbjct 892910 TGTTCAATAAGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTC 892859 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||| |||||| |||||||||| || ||||||||||| Sbjct 884504 CTTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 884445 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 884444 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 884396 >seq3811 Length=621665 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | || |||| | ||||| |||||||| ||| ||| |||||||| Sbjct 103343 TTAGGCCACGTGGCGGACGATGGAGGACACGCAGGTGCAGCCCACACCCACCAGCATCTT 103284 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | || || || || ||| | | || | | || || || |||||||| Sbjct 103283 CTCCACCCGGAAGGAGAAGGGACAGTTCTCAGGCTCCCTCTTCAGGACCAGGATCTCTTG 103224 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 |||| | || ||||||||||||| || | ||||| | |||||| ||||| | Sbjct 103223 CTGGAGGAGAACAGAGTTCATGTGGTGCTCCAACTTCCCCTGAGCATTGACACAGCGCTG 103164 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||| |||||||| | | || |||||||| Sbjct 103163 GTGGCGGCACTGTGCCTCCCAGATCACAGAAGGATATCTGTTAGGGTCCTCATTGCG 103107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360237678374702