Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6322 143 3e-29 seq12441 116 4e-21 seq1093 111 2e-19 seq116398 100 3e-16 seq2307 98.7 1e-15 >seq6322 Length=173588 Score = 143 bits (158), Expect = 3e-29 Identities = 157/207 (76%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 ||||||||||| || || || ||||| || || | || || ||||| ||||| || ||| Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA- 24295 || || ||||| ||||| || |||||||| || ||||||| | || || ||||||||| Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 24296 --ACCGGCGCTGTC-ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | | | |||| ||||| | ||||| || ||||||||||| |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 24353 CATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||||| |||||||| |||||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGATA 119584 >seq12441 Length=306159 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 76075 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 76134 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 76135 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 76194 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 76195 CTGTTTCTTATACCATA 76211 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 96476 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 96535 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | |||||| | || || ||| | || || | |||||| |||| Sbjct 96536 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 96595 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || ||||| | || | |||||||| || ||||| Sbjct 96596 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCAT 96641 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | |||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 72901 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 72951 >seq1093 Length=1386444 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||||||||||| || || || ||||| || || || || | Sbjct 281501 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 281560 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || ||||| ||||| || ||||| | || ||||||| Sbjct 281561 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGG 281620 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 281621 CCACAACTCGTTCTCC 281636 >seq116398 Length=207 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||||||| ||| || ||||| ||||||| |||||| ||||| ||||| | || |||||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 ||||| || || ||||| || || || || ||||| ||||| |||||||| || ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 >seq2307 Length=4779897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 580533 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 580474 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 580473 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 580414 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 580413 ACCACTCTTTCCCC 580400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592013151252960