Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6987 242 4e-59 seq2928 136 5e-27 >seq6987 Length=263106 Score = 242 bits (268), Expect = 4e-59 Identities = 577/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Plus Query 9509 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 9568 ||||||| || | || ||| | || |||||| |||| |||| || ||| | ||| Sbjct 123590 TGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGGCTA 123649 Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 | || | ||| | ||||||||||| |||||| |||| ||||| || || | ||||| | Sbjct 123650 ATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTCTTTCTCTTCACCGTTCCATTCT 123709 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 ||| |||||| || |||| || | ||| |||||| | | |||||||| || Sbjct 123710 TGATTCACTATGTT---ATGTGGAATAAATGGGGTTTTGGCCATCACATGTGTAAAGTGA 123766 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 || || | | ||| | | ||||||| || |||||| |||||| ||||| ||| Sbjct 123767 TCTCTGGGTTTTACTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATACTGCTGACAA 123826 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 9808 | || ||||| || || |||| ||||||| ||| |||| | || || || | Sbjct 123827 TTGATAGGTACCTGGCCATTGTTCATGCTGTGTTTGCCCTGAGAACCCGGACTGTGACTT 123886 Query 9809 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 9868 || | | ||| | | |||||| ||||||||| || | ||||||||| Sbjct 123887 TTGCTACCATCACCAGCATCATCACCTGGGGACTGGCAGGGCTGGCCGCATTCCCTGAAT 123946 Query 9869 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 9925 || |||| ||| |||||| || |||| || | ||| || | |||| | |||| Sbjct 123947 TTATCTTCTATGTGTCCCAAGACAACGATGG-AGAGCATTTC--TGCGGTCCTCATTACC 124003 Query 9926 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984 ||||| || | || | |||| ||| ||| | | | ||| ||| || || Sbjct 124004 CAGAGG-GTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGT 124062 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 124063 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 124122 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 || |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | | Sbjct 124123 AGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTC 124182 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTC-ACGCAAC 10163 | |||| |||||||||| || |||||| | ||||| || || ||| | |||| | ||| Sbjct 124183 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCAAAGCA-- 124240 Query 10164 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222 | || || ||| ||| | ||||| || ||||| |||| ||| | | || Sbjct 124241 CATTTTTGGAGAACAGCTGTCAACAGAGCACACACCTGGACCTGGCCATGCAGGTGACTG 124300 Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 124301 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGCGAGA 124360 Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 10342 ||| | | |||||| | || |||||| | |||| ||||||| | || | Sbjct 124361 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACATGTGGTAGTCTACCTGGGGAAAT 124420 Query 10343 ACATCCCCTTCCTGTCTGGTGA 10364 | || || ||||| ||||||| Sbjct 124421 ATATTCCATTCCTTCCTGGTGA 124442 Score = 242 bits (268), Expect = 4e-59 Identities = 577/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Plus Query 176395 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 176454 ||||||| || | || ||| | || |||||| |||| |||| || ||| | ||| Sbjct 123590 TGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGGCTA 123649 Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 | || | ||| | ||||||||||| |||||| |||| ||||| || || | ||||| | Sbjct 123650 ATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTCTTTCTCTTCACCGTTCCATTCT 123709 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 ||| |||||| || |||| || | ||| |||||| | | |||||||| || Sbjct 123710 TGATTCACTATGTT---ATGTGGAATAAATGGGGTTTTGGCCATCACATGTGTAAAGTGA 123766 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 || || | | ||| | | ||||||| || |||||| |||||| ||||| ||| Sbjct 123767 TCTCTGGGTTTTACTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATACTGCTGACAA 123826 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 176694 | || ||||| || || |||| ||||||| ||| |||| | || || || | Sbjct 123827 TTGATAGGTACCTGGCCATTGTTCATGCTGTGTTTGCCCTGAGAACCCGGACTGTGACTT 123886 Query 176695 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 176754 || | | ||| | | |||||| ||||||||| || | ||||||||| Sbjct 123887 TTGCTACCATCACCAGCATCATCACCTGGGGACTGGCAGGGCTGGCCGCATTCCCTGAAT 123946 Query 176755 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 176811 || |||| ||| |||||| || |||| || | ||| || | |||| | |||| Sbjct 123947 TTATCTTCTATGTGTCCCAAGACAACGATGG-AGAGCATTTC--TGCGGTCCTCATTACC 124003 Query 176812 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870 ||||| || | || | |||| ||| ||| | | | ||| ||| || || Sbjct 124004 CAGAGG-GTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGT 124062 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 124063 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 124122 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 || |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | | Sbjct 124123 AGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTC 124182 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTC-ACGCAAC 177049 | |||| |||||||||| || |||||| | ||||| || || ||| | |||| | ||| Sbjct 124183 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCAAAGCA-- 124240 Query 177050 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108 | || || ||| ||| | ||||| || ||||| |||| ||| | | || Sbjct 124241 CATTTTTGGAGAACAGCTGTCAACAGAGCACACACCTGGACCTGGCCATGCAGGTGACTG 124300 Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 124301 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGCGAGA 124360 Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 177228 ||| | | |||||| | || |||||| | |||| ||||||| | || | Sbjct 124361 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACATGTGGTAGTCTACCTGGGGAAAT 124420 Query 177229 ACATCCCCTTCCTGTCTGGTGA 177250 | || || ||||| ||||||| Sbjct 124421 ATATTCCATTCCTTCCTGGTGA 124442 >seq2928 Length=1604220 Score = 136 bits (150), Expect = 5e-27 Identities = 126/159 (79%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 |||||| |||| | ||||||||| || ||||| || ||||||||||||| | ||| Sbjct 1330571 CAGCGCTGCAGCTGCCTCCTGAGGGTCTTCAGCTTCTCTCCCAGGGAGTTCAAATGCTCC 1330630 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || || |||| || ||||||||| ||||||||||||||||| |||||||||||| Sbjct 1330631 TTGATTTCTGG-----GCCGTGGTTCTCTGCCTGGGGCATCACCTCTACCAGGTAAAACT 1330685 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||| || |||| || ||||| |||| |||||||| Sbjct 1330686 GGATCATTTCTGACAAGGTTTGGCAACCCAAGTAACCCT 1330724 Score = 109 bits (120), Expect = 6e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || |||||||||| |||||||||| || |||||| |||| |||||||||||||| || Sbjct 1328304 AGCTTTTCATCTTGATGGTCATGTATGCTTCTATGCAGTTGATGAAGATGTCAAATTCAT 1328363 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||||||||| ||||| || ||||||| Sbjct 1328364 TCATGGCCTTGTAGACACCTTTCTCTTGGAGCT 1328396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588378839256080