Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2825 159 4e-34 seq880 116 4e-21 seq2783 82.4 9e-11 >seq2825 Length=1909819 Score = 159 bits (176), Expect = 4e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| ||||| || || | || |||| Sbjct 1561920 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCACCAGGCCACGGGGCCCGAGGC 1561861 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 1561860 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGATGCGA 1561801 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| || |||| ||| |||||| | | |||| | ||||||||| || || || | Sbjct 1561800 CATTCTCAATAAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 1561741 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || |||||||| ||||| Sbjct 1561740 CCAGCGGGCGCGCGGAGAAGGCATACAC 1561713 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 83238 GCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCT 83297 |||| |||| | ||| || ||||||| ||||||||||| ||| | |||| || |||| Sbjct 1562286 GCGCTGGCAAAGACTCCCGCAGGAAGGTAAAGAGCGGATGAGCCTTCTCACCATTCACCT 1562227 Query 83298 CGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCA 83357 ||||||||||||| | | ||||| || ||||| || ||||| |||| | ||| | Sbjct 1562226 CGCACTTCTCGAACAATGTGAAGTTGGGTTCGAACCCCCCACCAGGTCGGATATACTTGA 1562167 Query 83358 GGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||||| || ||||| | |||| ||| || |||| Sbjct 1562166 GGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCCT 1562131 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 ||||||| ||||||||||||||||||||| | |||||||||||| || |||||||| Sbjct 1562550 CCCACCAGGAACTTCTCGAAGTTCCAGGCAATGTCGTTGCGGCATACCGGAGACCAAATG 1562491 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCG 83219 ||| || ||||||| ||| ||||| Sbjct 1562490 ATGTACTTGGGGTCGGTCATGAGCG 1562466 >seq880 Length=2831060 Score = 116 bits (128), Expect = 4e-21 Identities = 125/165 (76%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 83100 GGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCC 83159 || ||||||||||||||| || | ||| | ||||||| ||||||||||||||||| Sbjct 1056241 GGCGGCTGTACCTGCGCATTGGAACACTGTCCGGGCCCACCAGGAACTTCTCGAAGTTCC 1056300 Query 83160 AGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG 83219 |||| | | |||||||||||||||||||||| |||| || ||||||| ||| |||| Sbjct 1056301 AGGCAATGCCGTTGCGGCACACTGGAGACCA---AATGCACTTGGGGTCGGTCATGAGCA 1056357 Query 83220 TGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGG 83264 | || || || ||||| |||| | ||| || ||||||| Sbjct 1056358 CAGTGGGATCTTCACTGGGCGCTGGCAAAGACTCCCGCAGGAAGG 1056402 >seq2783 Length=2019327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 215/328 (66%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| || || | ||||||| | || | ||| || Sbjct 927595 GATGTCTGGCTCTATGTTGATGGTTTGAAAGGTGCGGCTGTAGCGACGGAACGGCTCCCC 927654 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | ||| | | ||||||||| |||||||||||||| || ||||| ||| ||| Sbjct 927655 TTCTGGACCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 927714 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| |||||| ||| ||| ||| ||| | | | ||| || ||| ||||| Sbjct 927715 CCACATGATGAGCCTGGGATCGGTCATGAGGGAGAACGGGTCATCATAAGGGTAGGGCAG 927774 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTC 83307 ||| ||| ||||||| | ||||| | | |||||||||||| ||||| | Sbjct 927775 CTTGTCTTTCAGGTAGGCGAAAACTGGATGCTCGTTCTGACCGTTGACCTCACACTTTTG 927834 Query 83308 GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAA 83367 | ||| | ||| | |||| | | || ||| || ||||| | ||| ||| || Sbjct 927835 GGTAAGCCTGAAGGTGGGCTGGTACCCACCCCCGGGGCGGACATACTTGAGGCTGTTCAG 927894 Query 83368 GATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | ||||| ||| |||||| Sbjct 927895 GATCTCCTCGTTCTGACAGTTCTCCTGG 927922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607044971988080